Supplementary Data

• Supplementary data for "CisMapper: Predicting regulatory interactions from transcription factor ChIP-seq data", Nucleic Acids Research, 45:e19, 2017.
• Supplementary data for "Differential motif enrichment analysis using CentriMo", BMC Genomics, 15:752, 2014.
• Supplementary data for "Motif-based analysis of large nucleotide datasets using MEME-ChIP", Nature Protocols, 9:1428-1450, 2014.
• Supplementary data for "Creating and validating tissue-specific cis-regulatory maps", Nucleic Acids Research, 42:11000-11010, 2014.
• Supplementary data for "Novel roles for Klf1 in erythropoiesis revealed by mRNA-seq", Genome Research, 22:2385-2398, 2012.
• Supplementary data for "Genome-wide in silico prediction of gene expression", Bioinformatics, 28:2789-2796, 2012.
• Supplementary data for "Inferring direct DNA binding from ChIP-seq", Nucleic Acids Research, Nucleic Acids Research, 40:e128, 2012.
• Supplementary data for "Epigenetic priors for identifying active transcription factor binding sites", Bioinformatics, 28:56-62, 2012
• Supplementary data for "DREME: Motif discovery in transcription factor ChIP-seq data", Bioinformatics, 27:1653-1659, 2011.
• Supplementary data for "The value of position-specific priors in motif discovery using MEME", BMC Bioinformatics, 11:179, 2010.
• Supplementary data for "A global role for KLF1 in erythropoiesis revealed by ChIP-seq in primary erythroid cells", Genome Research, 20:1052-1063, 2010.
• Supplementary data for "Assessing phylogenetic motif models for predicting transcription factor binding sites", Bioinformatics, 25:i339-i347, 2009.