MEME-ChIP Study Cases

From: Wenxiu Ma, William S. Noble and Timothy L. Bailey, "Motif-based analysis of large nucleotide datasets using MEME-ChIP", Nature Protocols, 2014.

Study Case 1: MEME-ChIP analysis of Gata1 ChIP-seq in human PDBE cells (based on ENCODE narrowPeak file wgEncodeSydhTfbsPbdeGata1UcdPk.narrowPeak) View MEME-ChIP Output Download Input Sequences Download Complete Output
Study Case 2: MEME-ChIP analysis of Puf3p PAR-CLIP in budding yeast (based on file gb-2013-14-2-r13-s7.gz from Freeberg et al., Genome Biology 14(2):R13, 2013) View MEME-ChIP Output Download Input Sequences Download Complete Output
Study Case 1b: CentriMo analysis based on ENCODE AWG narrowPeak file wgEncodeAwgTfbsSydhPbdeGata1UcdUniPk.narrowPeak View CentriMo Output Download Input Sequences