Supplemental data for "Inferring direct DNA binding from ChIP-seq".

• CentriMo results (motif enrichment analysis) on Chen et al. (2008) mESC ChIP-seq datasets and Pjanic et al. (2011) NFIC ChIP-seq dataset. Motifs are from JASPAR(vertebrates)+UniPROBE(mouse) compendium. [individual files] [gzipped tar file]
• AME motif enrichment results on Chen et al. (2008) mESC ChIP-seq datasets and Pjanic et al. (2011) NFIC ChIP-seq dataset. [individual files] [gzipped tar file]
• CentriMo results using selected motifs in E2f1, Nanog and Smad1 datasets from Chen et al. (2008). [individual files] [gzipped tar file]
• Motif discovery results using on NFIC ChIP-seq peaks from Pjanic et al. (2011) using Amadeus, DREME, Trawler and Weeder. [gzipped tar file]
• JASPAR+UniPROBE motifs in MEME format. JASPAR(vertebrates)+UniPROBE(mouse) motifs in MEME format. [individual file]
• mESC ChIP-seq peaks (500bp around peak centers) from Chen et al. (2008). [gzipped tar file]
• mEF NFIC ChIP-seq peaks (500bp around peak centers) from Pjanic et al. (2011). [gzipped tar file]