CentriMo Analysis of MCF10A-ER-Src ChIP-seq data

From: Tom Lesluyes, James Johnson, Philip Machanick and Timothy L. Bailey, "Differential motif enrichment analysis using CentriMo", 2014.


All results files from the CentriMo analyses presented in the paper are available via links in the tables below.

Paired ChIP-seq Experiments on treated and untreated MCF10A-ER-Src Cells
Differential Central Motif Enrichment Analysis (Treated vs. Untreaded cells)
ChIP-ed Transcription Factor Tamoxifen Treatment time Output FilesInput Files (gziped FASTA files)
FOS4hr centrimo.html centrimo.txt treated peak regions (500bp) untreated peak regions (500bp)
FOS12hr centrimo.html centrimo.txt treated peak regions (500bp) untreated peak regions (500bp)
FOS36hr centrimo.html centrimo.txt treated peak regions (500bp) untreated peak regions (500bp)
MYC4hr centrimo.html centrimo.txt treated peak regions (500bp) untreated peak regions (500bp)
STAT312hr centrimo.html centrimo.txt treated peak regions (500bp) untreated peak regions (500bp)
STAT336hr centrimo.html centrimo.txt treated peak regions (500bp) untreated peak regions (500bp)

Bound vs. unbound promoters in untreated MCF10A-ER-Src cells
Differential Local Motif Enrichment Analysis (Bound vs. Unbound Promoters)
ChIP-ed Transcription Factor Tamoxifen Treatment time Output FilesInput Files (gziped FASTA files)
FOS centrimo.html centrimo.txt bound promoters (500bp) unbound promoters (500bp)
MYC centrimo.html centrimo.txt bound promoters (500bp) unbound promoters (500bp)
STAT3 centrimo.html centrimo.txt bound promoters (500bp) unbound promoters (500bp)