MEME

For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net.

If you use MEME in your research, please cite the following paper:
Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994.

Discovered Motifs   |   Block diagrams of Motifs   |   Program information   |   Explanation

Discovered Motifs

Motif Overview

Motif 1
  • 3.9e-153
  • 252 sites
 Motif 1 Logo Motif 1 Logo
Motif 2
  • 1.5e-048
  • 84 sites
 Motif 2 Logo Motif 2 Logo
Motif 3
  • 8.9e-010
  • 23 sites
 Motif 3 Logo Motif 3 Logo

Further Analysis

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Motif 1

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Summary

Sequence Logo

E-value 3.9e-153
Width 15
Sites 252
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PNG LOGOS require CONVERT from ImageMagick; see MEME installation guide
StandardReverse Complement

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   Orientation:    SSC:    Format:    Width: cm    Height: cm   

Regular expression

[TA][AT][TA][AT][CT][ATC]T[GA]TA[TA]ATA[TA]

Further Analysis

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Data Formats

View the motif in PSPM Format 
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Sites

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Name Start p-value Sites
sacCer3_chrIV_1428247_1428347_- 44 6.07e-08 CTCACACATA TATACATGTATATAT TTGTAACTTT
sacCer3_chrXV_946007_946107_+ 41 1.16e-07 ATTATTAGCA TAAACCTGTATATAT ACATATGTAA
sacCer3_chrXV_414028_414128_+ 43 3.15e-07 GATTTTTTCA CTTACCTGTATATAT ATTGGTTTTT
sacCer3_chrII_608929_609029_+ 78 4.80e-07 TTGGTCCTTT TATACTTGTAAATAT TTTTACCA
sacCer3_chrIV_285329_285429_- 41 4.80e-07 TTGTATTAGG TTTACATGTATATAT ATGTATGTAT
sacCer3_chrVII_647041_647141_- 54 4.80e-07 TATAAATAAA CATACCTGTAAATAC TAAAAAGTAG
sacCer3_chrII_722332_722432_+ 45 4.80e-07 CAGCAATAAT AATACCTGTAAATAT CTCAACATAC
sacCer3_chrXII_644308_644408_+ 44 1.04e-06 TAGCGTTCTT TCTACTTGTAAATAT ATACGTAAAA
sacCer3_chrXI_131092_131192_+ 48 1.49e-06 TATTTAATTA ACCACCTGTATATAT TGCTTAAATT
sacCer3_chrXV_775304_775404_+ 41 1.49e-06 ATTTACTACG TTTACTTGTATATAT TTGTAAACTA
sacCer3_chrXV_54506_54606_- 35 1.49e-06 AAATCTATAC TATATATGTATATAT ACTCACTATA
sacCer3_chrXVI_600570_600670_- 52 1.49e-06 TCTCTGTACA TATATATGTATATAT TTACTTATTA
sacCer3_chrVIII_342262_342362_+ 54 2.11e-06 TATATCTCTA CATACTTGTATATAC CGAACATAAG
sacCer3_chrXIII_294978_295078_+ 43 2.11e-06 ATCTATAGCC CATACTTGTATATAC TACGTGTAAG
sacCer3_chrXIII_445444_445544_- 63 2.77e-06 ATCTAATCTG AAAACATGTAAATAT ATATACGTGT
sacCer3_chrVIII_76030_76130_- 47 2.77e-06 TGTCATAAAA AATACTTGTAAATAT GAATAGAAAC
sacCer3_chrVIII_220521_220621_+ 38 2.77e-06 TTATACTCCA TATTCTTGTAAATAT ATAATAAACT
sacCer3_chrVII_381450_381550_- 37 2.77e-06 GATAAATGTA TATTCTTGTAAATAT TATAACATAT
sacCer3_chrIII_23904_24004_- 41 2.77e-06 ACCATTCCGC TCTATATGTATATAT TTACGTAACT
sacCer3_chrII_586486_586586_- 42 2.77e-06 ATCGATTAGA TATTCTTGTAAATAT ATGAGGTCTT
sacCer3_chrXIII_445390_445490_- 9 2.77e-06 CTAATCTG AAAACATGTAAATAT ATATACGTGT
sacCer3_chrIX_402760_402860_- 43 3.70e-06 ATCCGGATAT ACCACATGTAAATAT AACGCAAGCG
sacCer3_chrXI_42227_42327_+ 55 3.70e-06 ATATATACAT TAAATATGTATATAT ATATGTATGA
sacCer3_chrXI_339088_339188_- 39 3.70e-06 TGTGCATTAT TCAACATGTAAATAC TAATACTGCA
sacCer3_chrXII_41180_41280_- 51 4.76e-06 TATATATATA TATATATGTATATAC GCACACATGT
sacCer3_chrIV_67880_67980_- 29 4.76e-06 ATGAATGTTT TATATTTGTAAATAT CACCTATCTT
sacCer3_chrXIV_621202_621302_- 36 4.76e-06 AATGTTTAAG AATGCCTGTAAATAT TACTATTTTG
sacCer3_chrII_536187_536287_+ 42 4.76e-06 TCTCGTTCGT TATTCCTGTAAATAA AGTTATATGT
sacCer3_chrXIII_571187_571287_- 60 6.15e-06 TTGTTAATAG CTTATATGTATATAT ATCTGGATAT
sacCer3_chrVII_755435_755535_- 7 7.70e-06 ATATTA GAAACCTGTATATAT GGGGGATAAC
sacCer3_chrVII_755492_755592_- 64 7.70e-06 AATCATATTA GAAACCTGTATATAT GGGGGATAAC
sacCer3_chrX_306368_306468_+ 42 7.70e-06 CGCCGTCGCC AACTCATGTAAATAT ACAGGCAGAG
sacCer3_chrXIII_21922_22022_- 37 9.49e-06 TCCATATGTA TATACATATATATAT ATATATATAT
sacCer3_chrIX_260897_260997_+ 46 9.49e-06 AGGGCATTCA TATACATATATATAT AGACGCGGTA
sacCer3_chrXIII_460701_460801_- 33 9.49e-06 AATCAATAGT ATTACCTGTATATAA TATCTTAATC
sacCer3_chrXI_280939_281039_+ 19 9.49e-06 TATATATATA TGTATCTGTATATAT ATGTTCATAC
sacCer3_chrXIV_397886_397986_- 42 9.49e-06 TTGCTTTCGG TCTTCATGTATATAA ATAAGTATGA
sacCer3_chrV_546471_546571_+ 45 9.49e-06 TATCTATATC TATATATGTATATAA CATTAACATG
sacCer3_chrXIV_694199_694299_- 29 1.18e-05 TAGCAATGAC CATACATATATATAT ATATATATAT
sacCer3_chrVIII_410128_410228_+ 7 1.18e-05 TTTCAT GCAACCTGTATATAT CAATTATGAT
sacCer3_chrXIV_379473_379573_+ 34 1.18e-05 AACAAATGTA TAAACTTGTACATAT TTCAAATAAA
sacCer3_chrXII_511615_511715_+ 32 1.18e-05 CACAATACTC GCAACCTGTATATAT TAACAACAAC
sacCer3_chrXIII_650819_650919_+ 42 1.42e-05 ATCGTTGGTT TTCCCCTGTATATAA AAAAGCATAT
sacCer3_chrII_784956_785056_- 23 1.42e-05 GTCGCCGTTT CGTTCATGTAAATAT TCAAATATAC
sacCer3_chrIII_35863_35963_+ 43 1.42e-05 TATCAGAGCC AAATCCTGTAAATAC TTTGTCTACA
sacCer3_chrII_735628_735728_- 42 1.42e-05 GTAACGAACA TCCTCATGTATATAA CCTATTGTAA
sacCer3_chrXIII_461872_461972_- 41 1.42e-05 GTGTCGATGG TATTTTTGTAAATAT TTTGACACAG
sacCer3_chrIV_130795_130895_- 41 1.72e-05 ATTGTCCACT ATCTCATGTAAATAT ACATAACAGG
sacCer3_chrIX_46859_46959_- 29 1.72e-05 TATGGTGCTA TTTGTCTGTAAATAT CCTTTATTAT
sacCer3_chrXII_131122_131222_- 44 1.72e-05 GCCGACAACC ATTTCTTGTATATAT AAGAATAGGT
sacCer3_chrXV_684110_684210_+ 57 1.72e-05 ATCGTTCCAA ACCGCATGTAAATAT AGGTACGATC
sacCer3_chrVII_252760_252860_+ 42 1.72e-05 TAATGGATGG TAAACATATATATAT ACAGATGTAC
sacCer3_chrIV_378775_378875_- 39 1.72e-05 ACTCTTACTT AATTTATGTATATAT TTTTTATGTA
sacCer3_chrXIV_292054_292154_- 51 1.72e-05 ATCTATTCTG TAAATATGTATATAA GTTTTAAATT
sacCer3_chrX_317003_317103_+ 70 1.72e-05 TACCTACTTG CGTATATGTATATAT ATATATATAT
sacCer3_chrXV_684081_684181_+ 86 1.72e-05 ATCGTTCCAA ACCGCATGTAAATAT
sacCer3_chrII_236995_237095_+ 30 1.72e-05 AAGGGAGTTG TATAAATGTATATAT ATAACTTTAT
sacCer3_chrIV_926154_926254_- 11 2.03e-05 TTTAACCGTT TTCCTATGTATATAT GCAACATTTC
sacCer3_chrIV_632874_632974_+ 33 2.03e-05 ACATCAGAAA TGAGCCTGTAAATAT CAATAACTTA
sacCer3_chrXIV_416695_416795_- 46 2.03e-05 TTATTATAAA TTAATATGTATATAC TTATCTTTGT
sacCer3_chrVIII_212016_212116_+ 38 2.03e-05 TAGAGTGCGG TGCATATGTATATAT CTATATATGT
sacCer3_chrXIII_842208_842308_+ 46 2.41e-05 ATTCCTGACT TATATATGTATATAG TATTATTTTT
sacCer3_chrXVI_224240_224340_- 34 2.41e-05 GGGCAGTCAT TAATCTTGTAAATAA ATATTTAAAC
sacCer3_chrIV_1132891_1132991_+ 44 2.41e-05 ATGATGTTAC TACTTATGTAAATAC TAAGATGACG
sacCer3_chrXV_720393_720493_- 10 2.41e-05 GATAATATT CTAACTTGTAAATAA CCGTCATATA
sacCer3_chrXII_663215_663315_- 85 2.83e-05 AATAATTTTA TTATCTTGTAAATAC A
sacCer3_chrII_729667_729767_- 45 2.83e-05 TAACTCTTAC TAATTCTGTATATAA TATAGCATAT
sacCer3_chrXI_543982_544082_- 42 2.83e-05 TTAACATGCT TACCTCTGTAAATAA AATCTTGGTG
sacCer3_chrIII_119154_119254_+ 57 2.83e-05 TAAATAAACT TAAGCCTGTATATAG AAACTTAATT
sacCer3_chrX_76528_76628_+ 36 3.29e-05 TCGTATTTGA TATATATATATATAT ATATATAATA
sacCer3_chrXIII_636181_636281_- 41 3.29e-05 CTAAAGCACT ACACTCTGTAAATAT ATACAACTAC
sacCer3_chrXI_284572_284672_+ 46 3.29e-05 ATGTAATCAT TATATATATATATAT TGTAATAATC
sacCer3_chrXVI_575103_575203_+ 55 3.29e-05 TCCTCCCACA TATATATATATATAT ACACTTTTAT
sacCer3_chrIII_60735_60835_+ 48 3.29e-05 TACATATACA TATACATATATATAA GCTCATTATA
sacCer3_chrIV_840392_840492_+ 32 3.29e-05 GATACACTAA TATATATATATATAT ATATATCTAT
sacCer3_chrIII_158886_158986_- 40 3.29e-05 TATACTGTCG TCTACTTGTACATAA TCACAGGGAT
sacCer3_chrIX_144048_144148_+ 72 3.29e-05 TACAGTTTTA TATATATATATATAT ATATATACAT
sacCer3_chrXII_339635_339735_- 40 3.29e-05 AAACCACGCA TATATATATATATAT ATATAAATAC
sacCer3_chrX_246975_247075_+ 35 3.29e-05 CATACGTATA AAATCATGTAAATAA CAATAAAATT
sacCer3_chrVIII_392523_392623_- 65 3.29e-05 TTTATAGGGA ATACCTTGTAAATAT CCTATGAAAA
sacCer3_chrXI_182838_182938_+ 35 3.29e-05 TTTTAAAAAA CCTATTTGTAAATAA AACTAATTCT
sacCer3_chrXVI_876176_876276_- 14 3.29e-05 ATCGCGAAAG TATATATATATATAT ATATAGGATA
sacCer3_chrII_177781_177881_- 42 3.29e-05 ACCTGTTTAA ACATTCTGTAAATAT TTAAACATAA
sacCer3_chrXVI_212786_212886_+ 39 3.29e-05 TACACACAGA TATATATATATATAT ATATATTATT
sacCer3_chrXII_380631_380731_+ 31 3.29e-05 TCGCACCGCT ATTATCTGTATATAA CATTCTAACT
sacCer3_chrVIII_392499_392599_- 41 3.29e-05 TTTATAGGGA ATACCTTGTAAATAT CCTATGAAAA
sacCer3_chrIV_603412_603512_+ 53 3.29e-05 ATTTATTATT CTAACATGTACATAC CTGTATAGTC
sacCer3_chrIV_540425_540525_+ 42 3.29e-05 GAAAAGATTT CGTACTTGTAAATAA AATAGGTGAA
sacCer3_chrVIII_75951_76051_+ 27 3.29e-05 GCAAATATAA TATATATATATATAT ATATATATAT
sacCer3_chrIV_1225075_1225175_- 33 3.83e-05 GCCTTACTAC ATAACTTGTATATAA TAAAAATTCA
sacCer3_chrXV_280161_280261_+ 46 3.83e-05 ATACGTATAT AATCTATGTAAATAC TGTAAACTAT
sacCer3_chrXV_1023013_1023113_- 49 3.83e-05 TAAACAAAAC CTCTTTTGTATATAT GATGTCGCCA
sacCer3_chrXII_573386_573486_- 42 3.83e-05 GTCGTGATGT ATAACTTGTATATAA TAGACAGCTG
sacCer3_chrVII_934307_934407_+ 43 3.83e-05 TAAGATTGTT CAAAAATGTAAATAT CATTTTGTTA
sacCer3_chrXII_556383_556483_+ 85 3.83e-05 ACATGTACGA CATATATATATATAT A
sacCer3_chrII_244253_244353_+ 52 3.83e-05 TATTCTATAT TCTATATGTAAATAG TTTTTATATG
sacCer3_chrIX_312444_312544_+ 63 3.83e-05 TCCTTCCTAT TCCGCTTGTAAATAA CTCCGTTATG
sacCer3_chrXIV_661711_661811_- 42 4.40e-05 GCCATTTGCA TCTATATATATATAT TTGTTGTGCC
sacCer3_chrVI_160331_160431_+ 41 4.40e-05 AGGTTAGGCG GAACCTTGTATATAT TTTTGTAAAA
sacCer3_chrVIII_504365_504465_- 72 4.40e-05 TATATGTATG TATACATATACATAT ACATATATCA
sacCer3_chrXI_183669_183769_+ 47 4.40e-05 TCGAATCTCA AAAAACTGTATATAT GATATTTGAA
sacCer3_chrX_651241_651341_+ 40 4.40e-05 TTTCACGAAA ACACCTTGTAAATAC TACTTGTGAA
sacCer3_chrXVI_533438_533538_+ 20 4.40e-05 GAGAAAAAAT CAGATATGTATATAT AAGAATATTA
sacCer3_chrXI_159422_159522_- 46 4.40e-05 ACGATTTTTT ACAACATGTAAATAG AAAATAGGAA
sacCer3_chrV_517464_517564_+ 32 5.06e-05 GAACTCCGCT TTTCACTGTATATAT AATATTACAT
sacCer3_chrV_307200_307300_+ 45 5.06e-05 TGTTTAGTTT TCTATATATAAATAT GTGTATCTTT
sacCer3_chrXII_735603_735703_- 42 5.06e-05 CTAACTGTGT TAAAAATGTATATAC TGGTGAATAC
sacCer3_chrXIV_129364_129464_- 35 5.06e-05 ATCATTAAAT CACATATATATATAT AATTTTAATG
sacCer3_chrVIII_164863_164963_- 43 5.06e-05 TCATATTTAC ATACTATGTATATAT AAAATTGGTA
sacCer3_chrIV_270000_270100_+ 34 5.06e-05 ACCTATAACG CGAGCTTGTAAATAT CTATATACCC
sacCer3_chrXI_186301_186401_+ 46 5.77e-05 TTGATATATC CATTCTTGTACATAA ATTATATACA
sacCer3_chrII_598991_599091_- 2 5.77e-05 G AACATCTGTAAATAG CCATTGCTTC
sacCer3_chrV_313806_313906_- 43 5.77e-05 TCATCTCTAA ACAATATGTAAATAA TTCTAAAGAA
sacCer3_chrI_139363_139463_- 46 5.77e-05 GTTTTTACTT TATATATATATATAC ATGTAACATA
sacCer3_chrXV_688642_688742_+ 40 5.77e-05 CTAACCACCA GCACCCTGTAAATAC TTACAAGGTA
sacCer3_chrIV_1035145_1035245_- 40 5.77e-05 ACTAGAGTTA CAACACTGTAAATAT TTATAAGCTA
sacCer3_chrVIII_147788_147888_- 62 5.77e-05 TTCTTTTATC TAAATATATAAATAT AAATTTACTT
sacCer3_chrVII_858704_858804_- 37 5.77e-05 AGAATAACTC ATTTTATGTATATAC ATATATTTTG
sacCer3_chrXVI_658942_659042_+ 42 5.77e-05 GCAGCTGTAT ATATCTTGTAAATAC TTTGTCAGGT
sacCer3_chrIV_1170148_1170248_+ 40 5.77e-05 ATAAGTTGGT AGTCTCTGTAAATAT ATAAAGTCAA
sacCer3_chrX_638150_638250_- 35 6.56e-05 TCTACGTAAA CTTGCCTGTACATAA ACACATTTAT
sacCer3_chrIV_1496008_1496108_- 48 6.56e-05 TCCTTTATTA TCTCTCTATATATAT ATAAGCGTTT
sacCer3_chrII_768698_768798_+ 5 6.56e-05 TCAA TATGCGTGTAAATAC TAGTTTTCGA
sacCer3_chrXIII_272833_272933_+ 25 6.56e-05 TTTGTTTTAT TTTGTATGTAAATAA CTTTTATAAA
sacCer3_chrXIV_672121_672221_+ 41 6.56e-05 TTTATGTAGT TTTCTTTGTATATAA ACTCTAGATA
sacCer3_chrII_768644_768744_+ 59 6.56e-05 CTTTCTTCAA TATGCGTGTAAATAC TAGTTTTCGA
sacCer3_chrVI_80449_80549_- 41 6.56e-05 TGAAAGACTT ATCACATATAAATAT AAATTTGCAC
sacCer3_chrXVI_564127_564227_- 31 6.56e-05 GTAGTCGCAC CAAATTTGTATATAG CCATTGGCGT
sacCer3_chrV_207544_207644_- 30 7.44e-05 GGCGTCAAAA AAAATTTGTACATAT AACTTTTTAT
sacCer3_chrXV_824411_824511_- 37 7.44e-05 GGTTTTTCAG ACCTTCTGTAAATAA AAAACTATCT
sacCer3_chrII_110023_110123_- 45 7.44e-05 TCATCTCAAT ATCCCTTGTAAATAA AAGGCAGAGT
sacCer3_chrXI_436805_436905_+ 24 7.44e-05 GTCTTATGTA GATACATATAAATAT ATATCTTTTT
sacCer3_chrXI_80011_80111_- 7 7.44e-05 ATTATA TTCGTATGTATATAA ATAGATCGAT
sacCer3_chrXII_212101_212201_- 34 7.44e-05 CTAAAGGTAT TTATACTGTATATAT CTCATTCATC
sacCer3_chrXIII_220754_220854_+ 37 8.35e-05 TTTATACCTA TCTATCTATATATAA AACCCATAAA
sacCer3_chrXIV_439474_439574_- 38 8.35e-05 AACGAGTACA CACATTTATAAATAT ATACAAAAGT
sacCer3_chrXIII_220713_220813_+ 78 8.35e-05 TTTATACCTA TCTATCTATATATAA AACCCATA
sacCer3_chrXII_695946_696046_- 47 8.35e-05 GTAAAACATT AATTTTTGTAAATAA TATTGACAGA
sacCer3_chrVII_830185_830285_+ 32 8.35e-05 TTCAGCCATT ATTACTTGTACATAA AATATTCTAC
sacCer3_chrIV_192324_192424_+ 38 8.35e-05 TAAAATTATC TATGCATATATATAA CTCAAATGGA
sacCer3_chrXI_599029_599129_- 57 8.35e-05 AATATAATAA CAATCGTGTAAATAC TACTCTATAA
sacCer3_chrVII_644592_644692_+ 46 9.41e-05 TTTGTTTCTT TTACTCTGTATATAG CCCTATATAA
sacCer3_chrIV_503889_503989_+ 33 9.41e-05 AGACATTATA TATTCCTGTGAATAT TTTTTAACTA
sacCer3_chrXII_371161_371261_+ 35 9.41e-05 CTCCAAGACT TTGCCCTGTATATAA TTAAACACCT
sacCer3_chrIV_1399513_1399613_- 42 9.41e-05 GAAAAATAAA TACACATGTATATTT ATATAATTAT
sacCer3_chrVIII_119831_119931_- 43 9.41e-05 GTTTCACTTC TTTATTTATAAATAT TTATACTACG
sacCer3_chrXIV_303494_303594_- 39 1.05e-04 TATAATATTG TGATTCTGTAAATAA CAACTAGTTT
sacCer3_chrXI_570148_570248_+ 38 1.05e-04 AGCATTTGAC AATGTTTGTAAATAA TATAATATGA
sacCer3_chrIV_552956_553056_+ 35 1.05e-04 TGATAATATA CGTTTATGTAAATAA TATCTTTTTC
sacCer3_chrXVI_96408_96508_- 85 1.05e-04 AATGAATAAA TAAGTATGTAAATAG G
sacCer3_chrII_111177_111277_+ 53 1.05e-04 ACACAATTCA TCTCTTTGTAAATAG TGTTATACCA
sacCer3_chrXIII_578854_578954_- 39 1.05e-04 TTATTGAGAA CATTTTTATATATAT ACCTTTTATT
sacCer3_chrXI_137853_137953_- 36 1.05e-04 CACATACCCA CCGCTATGTATATAT TTTCCTATAT
sacCer3_chrXIII_499201_499301_+ 52 1.05e-04 TAATAAATAT TTCAACTGTACATAT GTATTTTCGC
sacCer3_chrVII_395909_396009_- 9 1.05e-04 TTCATTTA ACTACATATACATAT ATAAGGGTTT
sacCer3_chrII_668411_668511_- 41 1.17e-04 ATTTTTCAAG ATTAACTGTATATAA ATAGAGATGG
sacCer3_chrXIV_613570_613670_+ 43 1.17e-04 AGTGACATAG CATTTATATATATAC AAGGGAAATG
sacCer3_chrIV_163362_163462_- 37 1.30e-04 TTTGTGTATC TACATATATACATAT ATAATTGTAA
sacCer3_chrIV_296235_296335_- 42 1.30e-04 TAGCTAGGGC TAAATTTATAAATAC TGCCTTATTA
sacCer3_chrIX_398338_398438_+ 57 1.30e-04 ATCCTCTTAT ATAGCATGTAAATAG AAAGTACGTA
sacCer3_chrXIV_192418_192518_+ 37 1.30e-04 TTCTGTTGAT ATCAAATGTATATAC TTAAACTTAG
sacCer3_chrXII_271540_271640_- 32 1.30e-04 ATGGGCAAAA CAGTCTTGTAAATAA CAAATTCCAA
sacCer3_chrX_314036_314136_- 66 1.30e-04 CTTACACAAT ATGCCTTGTATATAT CGCACGATTA
sacCer3_chrV_553268_553368_+ 38 1.30e-04 TACAATAGCT GTACCATGTAAATAA TACATATATG
sacCer3_chrVII_418547_418647_+ 42 1.30e-04 ATATACGATG TACATATATACATAT ACTGCTGGTG
sacCer3_chrVII_974709_974809_- 44 1.30e-04 TGATACTATC CAAACATGTAAATTT TACGTACCAT
sacCer3_chrX_348661_348761_- 32 1.30e-04 GACATATATA TGCACATATATATAA TTATATACTT
sacCer3_chrVI_42545_42645_+ 33 1.30e-04 CTAGGCGATA TAGATTTGTATATAA TTTTATATAA
sacCer3_chrVII_952433_952533_- 41 1.43e-04 TAAGATGCCA TATACTTGTGAATAC AAAATAAAGG
sacCer3_chrXVI_509534_509634_+ 39 1.43e-04 CCTCACCCCT GCAAACTGTAAATAT AATCCTAGAG
sacCer3_chrXII_875558_875658_- 44 1.58e-04 TATAGAGCTA AATAACTATATATAT GTATGCGCAA
sacCer3_chrI_48232_48332_+ 45 1.58e-04 ATGTAACAAC TTATTATATAAATAT TTAAGGGCAA
sacCer3_chrXVI_701962_702062_+ 83 1.58e-04 TTTTGTAATT TATCCTTATATATAG TCT
sacCer3_chrIV_1134123_1134223_- 38 1.58e-04 GAATTGTCAA CTACCTTATATATAC TTCTTCAACA
sacCer3_chrXVI_434136_434236_+ 30 1.58e-04 ACGTCATAAA TAAATATGTATACAT ATAAATTAAA
sacCer3_chrXVI_302593_302693_+ 21 1.58e-04 GACAACTCAA ATTAATTGTAAATAC AAAGTCATTC
sacCer3_chrXIII_833268_833368_- 85 1.58e-04 TAATATGGGA CTTTTTTATATATAT A
sacCer3_chrX_461579_461679_+ 66 1.58e-04 ACTCATATAA TGAATGTGTAAATAT GAAAAAAAAA
sacCer3_chrIX_324093_324193_+ 36 1.58e-04 CAATTTCTTT ATAGCATATAAATAT CAAATATATA
sacCer3_chrIV_174143_174243_- 43 1.73e-04 CAATCGTGAA ATTTTCTGTACATAA AGTGCTACTT
sacCer3_chrXI_115358_115458_- 23 1.73e-04 CGATATTTTT TTCTTTTATATATAT GATTTTCTCT
sacCer3_chrXVI_797796_797896_+ 34 1.73e-04 AGTTTAGAGA AAGACGTGTAAATAT TTTTTAAAAA
sacCer3_chrVIII_169341_169441_- 44 1.73e-04 CTGGAGCATC CTTACTTGTCTATAT GGCATGATCC
sacCer3_chrIV_915979_916079_+ 49 1.73e-04 TTCCTTTTTA TTTTTCTATATATAA TTTATTGGGT
sacCer3_chrXIII_864316_864416_- 55 1.90e-04 TTTTTCTCTT TATATGTATAAATAT AGATATGCAC
sacCer3_chrVII_314256_314356_+ 33 1.90e-04 AATAAATAAG AATATATGTATACAT AACATTATAT
sacCer3_chrV_424295_424395_+ 6 1.90e-04 AAAGA AAGCTTTGTAAATAT GATGAGAGAA
sacCer3_chrXV_1011071_1011171_+ 41 1.90e-04 GGGCAATCTA GATCACTGTATATAC TATAGATATT
sacCer3_chrVIII_392908_393008_- 37 1.90e-04 GTACAGTAAG ATCACTTATAAATAA TCACATTATA
sacCer3_chrXI_243012_243112_- 35 1.90e-04 CCACTTGTAT TCTCTATATAAATAA AAAATTATAT
sacCer3_chrXII_539866_539966_- 44 1.90e-04 GTCACGTCCT AAAAATTGTAAATAA GCGCTGGTTC
sacCer3_chrXV_551581_551681_+ 42 2.08e-04 GAGTCTCCAA CTTTTCTATAAATAA CCTGAAAGAT
sacCer3_chrXI_169005_169105_- 35 2.08e-04 ACATAAAGTT TCTTCTTATACATAC TCTATTTATT
sacCer3_chrX_347296_347396_- 30 2.08e-04 ATATTTATTT TTTATTTATACATAT ATATTTATTT
sacCer3_chrX_433096_433196_+ 11 2.08e-04 ATGTCTAGGA AATGATTGTAAATAC CTTTATTCAT
sacCer3_chrXIV_713470_713570_- 38 2.08e-04 AAAAAGATGG TGATACTGTAAATAC TACATTGGTC
sacCer3_chrII_528764_528864_+ 44 2.08e-04 TCGATGATAT TTCTCCTGTAAATTT ACCTGAATGG
sacCer3_chrXII_837836_837936_- 30 2.08e-04 CTGAAGCAGC TTCAAATATATATAT TTTTTACATA
sacCer3_chrV_366524_366624_+ 61 2.26e-04 CAACTTTTTA TAAGTATATATATAA GATACACAAT
sacCer3_chrXIV_643445_643545_+ 35 2.26e-04 TCATTCTCCT TCATTGTGTATATAA TAATATTATT
sacCer3_chrIV_924868_924968_+ 48 2.26e-04 CTGAATTTTA CCCAATTGTAAATAG TAAAAGACCA
sacCer3_chrIV_580425_580525_+ 54 2.26e-04 ATTTCATTAT TTTATATGTATATTT TGTATAACTA
sacCer3_chrI_56912_57012_- 39 2.46e-04 TACTTTTGCT TCCCTCTGTGTATAT TCTTTATATA
sacCer3_chrIV_45894_45994_+ 45 2.46e-04 TGAATATTAC TTATATTGTATATAA ATTTTGTTTT
sacCer3_chrIV_45938_46038_+ 1 2.46e-04 TTATATTGTATATAA ATTTTGTTTT
sacCer3_chrX_355888_355988_+ 34 2.66e-04 GTCAGAGCTA AGTTCTTATATATAC TTTCTAAATA
sacCer3_chrIV_701867_701967_- 13 2.66e-04 AAAGGAATAT CTGGTCTGTAAATAA TAATTTCCAC
sacCer3_chrXVI_285594_285694_- 39 2.66e-04 ATGCGGGGGA GAATTCTATAAATAT ATTCAAAAAA
sacCer3_chrXI_438303_438403_+ 37 2.88e-04 AAGAAGCTGA CGAAATTGTAAATAA AGTTCTTGAT
sacCer3_chrXV_253056_253156_- 44 2.88e-04 ATCCTTGTAT CTTTTTTATATATAA TGTCTAGGTA
sacCer3_chrVI_64169_64269_- 35 2.88e-04 TAAATAGACA CTCACATGTATATTA ATTTATAAAA
sacCer3_chrX_50032_50132_- 30 2.88e-04 TAAGTTTCTG GCGATATGTAAATAC CATAATAATT
sacCer3_chrXII_729186_729286_+ 42 2.88e-04 CGACGAATAT CACTTCTGTCAATAT TTAGGTAAGG
sacCer3_chrIX_364537_364637_+ 53 2.88e-04 ATTCAATATA ATATAATGTATATAA GATCACACTA
sacCer3_chrX_577168_577268_- 29 2.88e-04 GGTCTTGATT GATACATGCATATAT ATTCTCTCCT
sacCer3_chrXVI_26047_26147_+ 47 3.11e-04 AAATAATTCT TAACATTATATATAT GCTAAAAGCA
sacCer3_chrXV_185645_185745_+ 50 3.11e-04 TACAATAAAT ATTCTTTATATATAC AGCTTTCGAT
sacCer3_chrXIII_695311_695411_+ 46 3.11e-04 ACAATGATTC CAAAATTATATATAC ATTTGATACT
sacCer3_chrIV_258889_258989_+ 41 3.11e-04 TGGAGGTGCT CTCATCTGCAAATAT TTACCACGCG
sacCer3_chrIV_1369371_1369471_+ 41 3.35e-04 GTTTCCTTGT TTCTAATATAAATAT ATTAATTAAG
sacCer3_chrIV_587986_588086_- 33 3.35e-04 GTTTCTGTCA TACACATATCTATAT TCCTTCCCCC
sacCer3_chrXV_784104_784204_+ 46 3.35e-04 ATAATTTAAT TTATTCTATATATAG ATTTGAGGAA
sacCer3_chrXIV_190953_191053_+ 16 3.35e-04 CATGAATTGT ACTTTTTATATATAA AGATAAACGT
sacCer3_chrIV_564798_564898_+ 44 3.60e-04 TTGACGGCAA TCATCATGTCTATAA TGTAATGGAA
sacCer3_chrIV_1287355_1287455_- 46 3.60e-04 CAGCTATTAC TCTTCCTATAAACAT GTTACTTTGA
sacCer3_chrII_284345_284445_+ 43 3.60e-04 CAACCATATA TCAACTTGTAAGTAT CACAGTAAAA
sacCer3_chrXIV_549291_549391_+ 31 3.60e-04 ATGTTCCCCC TACGTATGTATACAC CCATATATTA
sacCer3_chrVII_556659_556759_+ 71 3.60e-04 TCCTGTGTTT CTTTTATGTATATTT TTTATCAATT
sacCer3_chrXI_280404_280504_+ 43 3.60e-04 TACGAGTTTC TTTAAATATACATAT ATGATATAAA
sacCer3_chrIII_240011_240111_+ 45 3.86e-04 CTATGATTTT AATTAATATATATAC ATGACAATTA
sacCer3_chrVIII_105125_105225_+ 55 3.86e-04 TAATCTTAAC CATTTATGTAAACAA CATATCATTT
sacCer3_chrVII_1014108_1014208_+ 54 3.86e-04 ACTTTTCTTT TATATTTGTATGTAT TTTTGTACTA
sacCer3_chrX_619065_619165_+ 51 3.86e-04 CCAAAATCTT ATATACTGTAAATAG TTTTATTTTA
sacCer3_chrXII_638558_638658_+ 34 3.86e-04 TTTCTTAGAT AACGTCTGTGAATAT ATTATTAACT
sacCer3_chrVIII_41003_41103_+ 42 4.42e-04 TTGCAAGAAA AAATCCTGTCCATAT TAAACAGAAG
sacCer3_chrIV_449243_449343_+ 40 4.42e-04 TTGAGCCTTT TGATCATGCAAATAT ATTACGGTAT
sacCer3_chrVII_479389_479489_- 49 4.42e-04 AATTCTTAAT TTTTAATATATATAA TGCACACACA
sacCer3_chrXII_1006960_1007060_+ 43 4.42e-04 TAGTATCTTC AAAATCTGTATATTA TAATTGATAG
sacCer3_chrXV_656499_656599_+ 39 4.72e-04 AATGAGTCAG CCAGATTATAAATAT TTATTTGATA
sacCer3_chrV_246895_246995_- 33 4.72e-04 AGTTAATAAC GCCTCATGTATATTT TTCATATATA
sacCer3_chrXVI_104103_104203_+ 46 4.72e-04 TAGAATGTTT TTCCTTTATAAATAG GGCTTTGGAA
sacCer3_chrIV_490901_491001_+ 76 5.04e-04 GATAGCTCCA TAATCTTATATACAT GGTTGCATAA
sacCer3_chrXII_507561_507661_+ 41 5.04e-04 TCACTCCATC TCATCCTATATATTT AACAGCTTTC
sacCer3_chrXII_259971_260071_- 7 5.04e-04 GGCAGG CAATAGTGTACATAT GGACCGCTTG
sacCer3_chrXIII_217043_217143_+ 14 5.37e-04 AAAATAACAG CGTACATATGAATAT TCTTTGTTTT
sacCer3_chrXIV_508662_508762_- 32 5.37e-04 CAAAAAAACC TGAGAATATATATAT TTACATTTAT
sacCer3_chrX_106731_106831_+ 37 5.37e-04 CTTCTAAAAA CTTACATATATATTC TGTTTATAAA
sacCer3_chrXI_454081_454181_+ 47 5.37e-04 GTATCTATAT ACAACCTATATACAC TTTGTAATAT
sacCer3_chrIV_1231551_1231651_+ 46 5.72e-04 GTGTTTCCTC TACTCATACAAATAT AAGAAAATCA
sacCer3_chrII_395306_395406_- 77 5.72e-04 TACGTATAAG AGTATGTGTACATAA TAACAATTT
sacCer3_chrXIII_725625_725725_+ 74 6.85e-04 ATATGTGATT TTAGCGTGTGAATAT AAAAAATACA
sacCer3_chrXV_382792_382892_+ 86 9.11e-04 TGCTTTTTCA TACATACGTACATAT

Block Diagrams

The height of the motif "block" is proportional to -log(p-value), truncated at the height for a motif with a p-value of 1e-10.
Click on any row to highlight sequence in all motifs. Mouse over the center of the motif blocks to see more information.

Name Lowest p-value Motif Location
sacCer3_chrIX_312444_312544_+ 3.83e-05
sacCer3_chrXVI_564127_564227_- 6.56e-05
sacCer3_chrVII_395909_396009_- 1.05e-04
sacCer3_chrIV_1170148_1170248_+ 5.77e-05
sacCer3_chrIV_915979_916079_+ 1.73e-04
sacCer3_chrXII_644308_644408_+ 1.04e-06
sacCer3_chrII_244253_244353_+ 3.83e-05
sacCer3_chrXVI_104103_104203_+ 4.72e-04
sacCer3_chrXI_599029_599129_- 8.35e-05
sacCer3_chrVIII_75951_76051_+ 3.29e-05
sacCer3_chrII_536187_536287_+ 4.76e-06
sacCer3_chrIV_540425_540525_+ 3.29e-05
sacCer3_chrIV_603412_603512_+ 3.29e-05
sacCer3_chrXII_212101_212201_- 7.44e-05
sacCer3_chrVIII_392499_392599_- 3.29e-05
sacCer3_chrIX_324093_324193_+ 1.58e-04
sacCer3_chrXIII_294978_295078_+ 2.11e-06
sacCer3_chrXIV_190953_191053_+ 3.35e-04
sacCer3_chrXV_784104_784204_+ 3.35e-04
sacCer3_chrXI_80011_80111_- 7.44e-05
sacCer3_chrX_461579_461679_+ 1.58e-04
sacCer3_chrVI_80449_80549_- 6.56e-05
sacCer3_chrXI_280404_280504_+ 3.60e-04
sacCer3_chrXI_159422_159522_- 4.40e-05
sacCer3_chrVII_556659_556759_+ 3.60e-04
sacCer3_chrXIII_499201_499301_+ 1.05e-04
sacCer3_chrXIII_833268_833368_- 1.58e-04
sacCer3_chrXII_837836_837936_- 2.08e-04
sacCer3_chrX_577168_577268_- 2.88e-04
sacCer3_chrXVI_302593_302693_+ 1.58e-04
sacCer3_chrII_768644_768744_+ 6.56e-05
sacCer3_chrXII_511615_511715_+ 1.18e-05
sacCer3_chrIV_580425_580525_+ 2.26e-04
sacCer3_chrXI_339088_339188_- 3.70e-06
sacCer3_chrXVI_658942_659042_+ 5.77e-05
sacCer3_chrXIV_672121_672221_+ 6.56e-05
sacCer3_chrVII_858704_858804_- 5.77e-05
sacCer3_chrXII_380631_380731_+ 3.29e-05
sacCer3_chrXVI_509534_509634_+ 1.43e-04
sacCer3_chrXII_539866_539966_- 1.90e-04
sacCer3_chrVIII_212016_212116_+ 2.03e-05
sacCer3_chrXV_720393_720493_- 2.41e-05
sacCer3_chrXIV_621202_621302_- 4.76e-06
sacCer3_chrXVI_212786_212886_+ 3.29e-05
sacCer3_chrXII_638558_638658_+ 3.86e-04
sacCer3_chrVIII_147788_147888_- 5.77e-05
sacCer3_chrV_546471_546571_+ 9.49e-06
sacCer3_chrII_177781_177881_- 3.29e-05
sacCer3_chrXVI_285594_285694_- 2.66e-04
sacCer3_chrII_236995_237095_+ 1.72e-05
sacCer3_chrXVI_876176_876276_- 3.29e-05
sacCer3_chrIV_1132891_1132991_+ 2.41e-05
sacCer3_chrVI_42545_42645_+ 1.30e-04
sacCer3_chrXV_684081_684181_+ 1.72e-05
sacCer3_chrII_722332_722432_+ 4.80e-07
sacCer3_chrIV_924868_924968_+ 2.26e-04
sacCer3_chrXII_556383_556483_+ 3.83e-05
sacCer3_chrXI_137853_137953_- 1.05e-04
sacCer3_chrXI_182838_182938_+ 3.29e-05
sacCer3_chrX_317003_317103_+ 1.72e-05
sacCer3_chrVII_647041_647141_- 4.80e-07
sacCer3_chrIII_119154_119254_+ 2.83e-05
sacCer3_chrVIII_119831_119931_- 9.41e-05
sacCer3_chrXI_543982_544082_- 2.83e-05
sacCer3_chrIV_1399513_1399613_- 9.41e-05
sacCer3_chrIV_270000_270100_+ 5.06e-05
sacCer3_chrVIII_169341_169441_- 1.73e-04
sacCer3_chrXIV_292054_292154_- 1.72e-05
sacCer3_chrX_348661_348761_- 1.30e-04
sacCer3_chrXIII_445390_445490_- 2.77e-06
sacCer3_chrII_586486_586586_- 2.77e-06
sacCer3_chrIX_364537_364637_+ 2.88e-04
sacCer3_chrIV_1035145_1035245_- 5.77e-05
sacCer3_chrXII_1006960_1007060_+ 4.42e-04
sacCer3_chrXVI_600570_600670_- 1.49e-06
sacCer3_chrXV_688642_688742_+ 5.77e-05
sacCer3_chrVIII_392523_392623_- 3.29e-05
sacCer3_chrII_729667_729767_- 2.83e-05
sacCer3_chrXI_42227_42327_+ 3.70e-06
sacCer3_chrVII_479389_479489_- 4.42e-04
sacCer3_chrXIV_643445_643545_+ 2.26e-04
sacCer3_chrVIII_164863_164963_- 5.06e-05
sacCer3_chrII_395306_395406_- 5.72e-04
sacCer3_chrII_528764_528864_+ 2.08e-04
sacCer3_chrIV_192324_192424_+ 8.35e-05
sacCer3_chrV_246895_246995_- 4.72e-04
sacCer3_chrXVI_533438_533538_+ 4.40e-05
sacCer3_chrXII_729186_729286_+ 2.88e-04
sacCer3_chrXVI_434136_434236_+ 1.58e-04
sacCer3_chrXI_436805_436905_+ 7.44e-05
sacCer3_chrXIV_397886_397986_- 9.49e-06
sacCer3_chrXIII_272833_272933_+ 6.56e-05
sacCer3_chrII_768698_768798_+ 6.56e-05
sacCer3_chrIV_378775_378875_- 1.72e-05
sacCer3_chrIV_1134123_1134223_- 1.58e-04
sacCer3_chrV_366524_366624_+ 2.26e-04
sacCer3_chrXV_54506_54606_- 1.49e-06
sacCer3_chrIV_258889_258989_+ 3.11e-04
sacCer3_chrIV_285329_285429_- 4.80e-07
sacCer3_chrIV_1496008_1496108_- 6.56e-05
sacCer3_chrX_619065_619165_+ 3.86e-04
sacCer3_chrX_50032_50132_- 2.88e-04
sacCer3_chrXIV_713470_713570_- 2.08e-04
sacCer3_chrVII_830185_830285_+ 8.35e-05
sacCer3_chrIV_449243_449343_+ 4.42e-04
sacCer3_chrIV_45938_46038_+ 2.46e-04
sacCer3_chrX_651241_651341_+ 4.40e-05
sacCer3_chrXI_280939_281039_+ 9.49e-06
sacCer3_chrXII_371161_371261_+ 9.41e-05
sacCer3_chrX_246975_247075_+ 3.29e-05
sacCer3_chrXVI_701962_702062_+ 1.58e-04
sacCer3_chrXIII_578854_578954_- 1.05e-04
sacCer3_chrX_433096_433196_+ 2.08e-04
sacCer3_chrXI_243012_243112_- 1.90e-04
sacCer3_chrXII_339635_339735_- 3.29e-05
sacCer3_chrVII_934307_934407_+ 3.83e-05
sacCer3_chrIII_23904_24004_- 2.77e-06
sacCer3_chrX_306368_306468_+ 7.70e-06
sacCer3_chrVII_252760_252860_+ 1.72e-05
sacCer3_chrIV_587986_588086_- 3.35e-04
sacCer3_chrVIII_392908_393008_- 1.90e-04
sacCer3_chrIV_503889_503989_+ 9.41e-05
sacCer3_chrXIII_460701_460801_- 9.49e-06
sacCer3_chrXI_454081_454181_+ 5.37e-04
sacCer3_chrXV_382792_382892_+ 9.11e-04
sacCer3_chrXIV_379473_379573_+ 1.18e-05
sacCer3_chrII_111177_111277_+ 1.05e-04
sacCer3_chrIV_45894_45994_+ 2.46e-04
sacCer3_chrXI_183669_183769_+ 4.40e-05
sacCer3_chrVIII_410128_410228_+ 1.18e-05
sacCer3_chrXII_259971_260071_- 5.04e-04
sacCer3_chrXIII_461872_461972_- 1.42e-05
sacCer3_chrIX_260897_260997_+ 9.49e-06
sacCer3_chrXIII_725625_725725_+ 6.85e-04
sacCer3_chrII_110023_110123_- 7.44e-05
sacCer3_chrXV_946007_946107_+ 1.16e-07
sacCer3_chrIX_144048_144148_+ 3.29e-05
sacCer3_chrIII_158886_158986_- 3.29e-05
sacCer3_chrXIV_694199_694299_- 1.18e-05
sacCer3_chrXII_695946_696046_- 8.35e-05
sacCer3_chrIV_840392_840492_+ 3.29e-05
sacCer3_chrI_139363_139463_- 5.77e-05
sacCer3_chrXII_573386_573486_- 3.83e-05
sacCer3_chrXIV_129364_129464_- 5.06e-05
sacCer3_chrXIII_695311_695411_+ 3.11e-04
sacCer3_chrXV_684110_684210_+ 1.72e-05
sacCer3_chrIV_1231551_1231651_+ 5.72e-04
sacCer3_chrVI_64169_64269_- 2.88e-04
sacCer3_chrIV_701867_701967_- 2.66e-04
sacCer3_chrXIV_613570_613670_+ 1.17e-04
sacCer3_chrXV_656499_656599_+ 4.72e-04
sacCer3_chrXIV_549291_549391_+ 3.60e-04
sacCer3_chrXVI_96408_96508_- 1.05e-04
sacCer3_chrXV_253056_253156_- 2.88e-04
sacCer3_chrIV_552956_553056_+ 1.05e-04
sacCer3_chrVII_1014108_1014208_+ 3.86e-04
sacCer3_chrVII_755492_755592_- 7.70e-06
sacCer3_chrVII_974709_974809_- 1.30e-04
sacCer3_chrII_608929_609029_+ 4.80e-07
sacCer3_chrXV_775304_775404_+ 1.49e-06
sacCer3_chrXV_1011071_1011171_+ 1.90e-04
sacCer3_chrII_668411_668511_- 1.17e-04
sacCer3_chrVII_644592_644692_+ 9.41e-05
sacCer3_chrIV_67880_67980_- 4.76e-06
sacCer3_chrVII_381450_381550_- 2.77e-06
sacCer3_chrXVI_224240_224340_- 2.41e-05
sacCer3_chrVIII_220521_220621_+ 2.77e-06
sacCer3_chrXII_735603_735703_- 5.06e-05
sacCer3_chrV_307200_307300_+ 5.06e-05
sacCer3_chrVII_418547_418647_+ 1.30e-04
sacCer3_chrX_347296_347396_- 2.08e-04
sacCer3_chrV_553268_553368_+ 1.30e-04
sacCer3_chrVIII_504365_504465_- 4.40e-05
sacCer3_chrVII_755435_755535_- 7.70e-06
sacCer3_chrXIII_571187_571287_- 6.15e-06
sacCer3_chrV_517464_517564_+ 5.06e-05
sacCer3_chrIII_60735_60835_+ 3.29e-05
sacCer3_chrXII_507561_507661_+ 5.04e-04
sacCer3_chrVIII_76030_76130_- 2.77e-06
sacCer3_chrVIII_342262_342362_+ 2.11e-06
sacCer3_chrIV_1369371_1369471_+ 3.35e-04
sacCer3_chrX_314036_314136_- 1.30e-04
sacCer3_chrII_284345_284445_+ 3.60e-04
sacCer3_chrXI_570148_570248_+ 1.05e-04
sacCer3_chrXII_41180_41280_- 4.76e-06
sacCer3_chrX_106731_106831_+ 5.37e-04
sacCer3_chrI_56912_57012_- 2.46e-04
sacCer3_chrXII_131122_131222_- 1.72e-05
sacCer3_chrI_48232_48332_+ 1.58e-04
sacCer3_chrXV_414028_414128_+ 3.15e-07
sacCer3_chrIV_490901_491001_+ 5.04e-04
sacCer3_chrVIII_41003_41103_+ 4.42e-04
sacCer3_chrV_424295_424395_+ 1.90e-04
sacCer3_chrXI_169005_169105_- 2.08e-04
sacCer3_chrXV_185645_185745_+ 3.11e-04
sacCer3_chrXVI_797796_797896_+ 1.73e-04
sacCer3_chrXVI_575103_575203_+ 3.29e-05
sacCer3_chrV_313806_313906_- 5.77e-05
sacCer3_chrII_735628_735728_- 1.42e-05
sacCer3_chrXII_271540_271640_- 1.30e-04
sacCer3_chrXIII_220713_220813_+ 8.35e-05
sacCer3_chrXV_1023013_1023113_- 3.83e-05
sacCer3_chrXIV_192418_192518_+ 1.30e-04
sacCer3_chrXI_284572_284672_+ 3.29e-05
sacCer3_chrXIII_445444_445544_- 2.77e-06
sacCer3_chrIX_402760_402860_- 3.70e-06
sacCer3_chrXV_824411_824511_- 7.44e-05
sacCer3_chrXI_438303_438403_+ 2.88e-04
sacCer3_chrXIII_636181_636281_- 3.29e-05
sacCer3_chrVIII_105125_105225_+ 3.86e-04
sacCer3_chrIII_240011_240111_+ 3.86e-04
sacCer3_chrXIII_21922_22022_- 9.49e-06
sacCer3_chrVI_160331_160431_+ 4.40e-05
sacCer3_chrXII_663215_663315_- 2.83e-05
sacCer3_chrXV_280161_280261_+ 3.83e-05
sacCer3_chrX_76528_76628_+ 3.29e-05
sacCer3_chrXIV_661711_661811_- 4.40e-05
sacCer3_chrIII_35863_35963_+ 1.42e-05
sacCer3_chrXIV_416695_416795_- 2.03e-05
sacCer3_chrX_638150_638250_- 6.56e-05
sacCer3_chrXIV_439474_439574_- 8.35e-05
sacCer3_chrIX_398338_398438_+ 1.30e-04
sacCer3_chrIX_46859_46959_- 1.72e-05
sacCer3_chrII_784956_785056_- 1.42e-05
sacCer3_chrXIII_220754_220854_+ 8.35e-05
sacCer3_chrIV_1287355_1287455_- 3.60e-04
sacCer3_chrIV_564798_564898_+ 3.60e-04
sacCer3_chrV_207544_207644_- 7.44e-05
sacCer3_chrXIV_508662_508762_- 5.37e-04
sacCer3_chrII_598991_599091_- 5.77e-05
sacCer3_chrXIV_303494_303594_- 1.05e-04
sacCer3_chrXVI_26047_26147_+ 3.11e-04
sacCer3_chrIV_296235_296335_- 1.30e-04
sacCer3_chrXI_131092_131192_+ 1.49e-06
sacCer3_chrIV_1225075_1225175_- 3.83e-05
sacCer3_chrVII_952433_952533_- 1.43e-04
sacCer3_chrIV_632874_632974_+ 2.03e-05
sacCer3_chrXI_115358_115458_- 1.73e-04
sacCer3_chrIV_926154_926254_- 2.03e-05
sacCer3_chrXIII_650819_650919_+ 1.42e-05
sacCer3_chrIV_1428247_1428347_- 6.07e-08
sacCer3_chrVII_314256_314356_+ 1.90e-04
sacCer3_chrX_355888_355988_+ 2.66e-04
sacCer3_chrIV_163362_163462_- 1.30e-04
sacCer3_chrXIII_864316_864416_- 1.90e-04
sacCer3_chrXI_186301_186401_+ 5.77e-05
sacCer3_chrXV_551581_551681_+ 2.08e-04
sacCer3_chrXIII_842208_842308_+ 2.41e-05
sacCer3_chrXIII_217043_217143_+ 5.37e-04
sacCer3_chrIV_130795_130895_- 1.72e-05
sacCer3_chrIV_174143_174243_- 1.73e-04
sacCer3_chrXII_875558_875658_- 1.58e-04
 
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Time 250.2 secs.

Motif 2

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Summary

Sequence Logo

E-value 1.5e-048
Width 29
Sites 84
show more
PNG LOGOS require CONVERT from ImageMagick; see MEME installation guide
StandardReverse Complement

Download LOGO
   Orientation:    SSC:    Format:    Width: cm    Height: cm   

Regular expression

TT[TC][TC][TC]TT[TC][TC][TC]T[TC][TC][TC][TC][TA][TCA]TT[TC]TT[CTA]T[TA][TC][TA][TC][TAC]

Further Analysis

Submit this motif to  
      
      
      
      
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Data Formats

View the motif in PSPM Format 
     PSSM Format 
     BLOCKS Format 
     FASTA Format 
     Raw Format 
     or Hide

Sites

Click on any row to highlight sequence in all motifs.

Name Start p-value Sites
sacCer3_chrXI_64260_64360_+ 1 9.99e-11 TTCTTTTTCTTTTCTTCTTCTTCCTTCTT CTTCTTTTCC
sacCer3_chrXI_64284_64384_+ 11 2.62e-10 TTCTTCTTCT TTTCCTCTTCTTCCTTCTTCTTCTTCTCC TCTTCCTCCT
sacCer3_chrIV_340505_340605_- 38 2.22e-09 TGATTACTTC TTTCCTTTTCTTTCCACTTCTTTTGTATA AGTTATCATA
sacCer3_chrV_79209_79309_+ 26 2.22e-09 ATCATCATCA TCTTCTTCTTCTTCTTCTTCTTCCTCTAC TGCTACTAAG
sacCer3_chrIV_600891_600991_+ 1 2.69e-09 TCCTCTTCCATCTCCACTTCCTCTGGCTC AGTAACTATC
sacCer3_chrXV_426582_426682_- 58 8.12e-09 TTGAATGGTC TCTTCGTTTTTTTTTTTTTTTTCTTCATC TATCCTGACT
sacCer3_chrXIII_571187_571287_- 19 2.62e-08 TGAGGATGTT TTCTTTTTTTTTTTTTTTTGGTTTCTTCT CCTTGTTAAT
sacCer3_chrIV_929172_929272_+ 3 4.89e-08 TT TTTTTTTTCATTTTTTTTTTTTATTCTTA TTTATGTATG
sacCer3_chrXVI_821841_821941_+ 57 6.59e-08 AAAATTCTGA TTCTTTTTTCTTTCATTCTTTTGTTGTTT TTGACTTGGG
sacCer3_chrXII_780960_781060_- 56 1.35e-07 TATAACTTTT TTTGTTTTTGTTTCCTTTTGTTTTTCTTA CTACTCATAA
sacCer3_chrXII_150237_150337_+ 22 1.35e-07 ATTTCAAATG TGCTCTCCTCTCCATTCTTTTTCTTGTTA ATAAAAATCC
sacCer3_chrIII_162837_162937_- 18 1.55e-07 GCCATTTTAT TTCCTGTCCCCTTCATCTTTGTTTATATC CATTCTAGAA
sacCer3_chrIX_312444_312544_+ 29 2.03e-07 GGTTTCGATG TACTCTTTTGTTTTCTTTTCCTTTTCCTT CCTATTCCGC
sacCer3_chrII_556313_556413_+ 59 2.64e-07 TATCATATCA TTTTTTTCTCTGTTTATTTCTTCTAGAAC TTATACCTGT
sacCer3_chrXIII_226705_226805_+ 39 2.64e-07 TCAAAATATT TGCCTTTTCTTTTTTAATTTTTGTTTATT CTTTAATGTA
sacCer3_chrXVI_326547_326647_+ 36 3.01e-07 CTGTTTCGAT CATTTTTCTTTTTCTTTTTCTTTATTTTA GAAAAAATTG
sacCer3_chrXVI_308592_308692_- 44 3.43e-07 TCATTTTTTA ATCTCTCCCTTCTCTATTTGTTACTTATT CGGTAAATAT
sacCer3_chrXII_795457_795557_- 15 4.99e-07 GGTAATAAGT TGTTTGTCTTCTTCTTTTTTTTGTTTAAT CATATAATAA
sacCer3_chrXI_556212_556312_+ 64 6.38e-07 TAATTTGTTT TTCTTTTTACATTCCTATTATTCTTCAAA GTCCAAAA
sacCer3_chrXIII_671751_671851_- 27 6.38e-07 ACCCATGTTT TTCTTTTGTGTCTATAATTCTTTTTTTTT ATCTCTAAGC
sacCer3_chrXI_559189_559289_- 35 7.19e-07 GTTGCAATGG CTCTCGTTTTTTTTAAATTTTTCTCTTTT CTCTTCTTTG
sacCer3_chrII_488771_488871_- 21 8.10e-07 TTTCTCTGCC CTCTCTTCTATTCACTTTTTTTATACTTT ATATAAAATT
sacCer3_chrV_86255_86355_+ 43 8.10e-07 AAATAAATCC TTTTTTTTATTTTCTATTTATTTTGTTAT TTATCATCTA
sacCer3_chrVII_395909_396009_- 67 8.10e-07 TAAAGTTTGA TTTTTTTTTTTTTACTTTTATTATGCACT GGGGC
sacCer3_chrII_680669_680769_- 69 9.11e-07 TCTCTCGTCT TCCCGTTCGCTCTTTTATTTTTTTATTTT TTT
sacCer3_chrXI_163552_163652_- 39 9.11e-07 TTTGATGATT TCTTTTTCCCTCCATTTTTCTTACTGAAT ATATCAATGA
sacCer3_chrIV_233877_233977_+ 40 1.02e-06 AATTCACCAT TCTCTTTTTTTTTATATTTTATCTTCTTC GTAATTCTAT
sacCer3_chrXII_1018024_1018124_- 56 1.15e-06 TTTTAAATCT TTCTTTTTCGATTTTAATTTTTTTAGTCT CTTTAATAAC
sacCer3_chrVII_905741_905841_+ 5 1.29e-06 TTGT TCTTTTTTCCTCTTTATCGCTTTCGTACT ATGGTCAGTC
sacCer3_chrX_228824_228924_- 2 1.44e-06 A TTCTTTAGCGTTTCTTTTTTTTATTTTAC TTTCCGTATC
sacCer3_chrVIII_504365_504465_- 6 1.61e-06 TATTG TTATCTGCCCTCTCTTCGTCTTTTGTTTA ATATAAATAA
sacCer3_chrXII_121851_121951_- 40 1.80e-06 CATTATTTGC TTTTTTCCATTACCTACTTTTTGTACCTC ATCTCTATTT
sacCer3_chrXVI_575103_575203_+ 5 1.80e-06 AAAT TTGCTTTTCGTCTCTTGCTTCTCTGTAAC TGTAGTTTTC
sacCer3_chrXV_775304_775404_+ 1 2.00e-06 CTTTTTTCTTTCTCTGCCTGGTTTAGTTT TATTTACTAC
sacCer3_chrVII_482592_482692_- 54 2.23e-06 CTCTTCATCA TCCTCTTCAGCATCTTCTGTTTCAGCTCA TCAGCCAACT
sacCer3_chrIV_45894_45994_+ 61 2.23e-06 TGTATATAAA TTTTGTTTTCTCTTAACTTTGTATCCTTA ATAAAATAAA
sacCer3_chrIV_45938_46038_+ 17 2.23e-06 TGTATATAAA TTTTGTTTTCTCTTAACTTTGTATCCTTA ATAAAATAAA
sacCer3_chrV_141699_141799_+ 35 2.76e-06 ACAATATAGC CTATTTTCTTCTCTTTTTTGGTCCGCCTC TGTTGTACGC
sacCer3_chrXI_356613_356713_+ 43 2.76e-06 TGTGGTTCTC TTCTTTTCAACTTCTTCTTCTTGACATTA TACTTTAATA
sacCer3_chrXII_904439_904539_+ 40 3.07e-06 AAGGTATCTA TCTTTTATATTTCTTATTTCCTCTTCTTA TATGATGCGG
sacCer3_chrXV_633144_633244_- 29 3.77e-06 CATATTTATT CTCGATTTGATTTTTTTTTCTTCTTTTCT TTAGTTGTAA
sacCer3_chrX_314036_314136_- 32 4.17e-06 AGGACATATT TTCGTTTCCTTTTTTTACTCATATCTTAC ACAATATGCC
sacCer3_chrXII_422276_422376_- 56 4.17e-06 ACCATCTCTC TCCCCTTCCGACTCTATTTCCCAATCTTT ATCAATAACG
sacCer3_chrXII_622016_622116_+ 57 4.61e-06 TTCTTTTATA TTTTTGTCAACCTTTTCTTAGTTTTCACA TTGGCAGGTA
sacCer3_chrXII_243439_243539_+ 3 4.61e-06 AT TTTTCTTTTTCATTTTTTTTTTAAATTCA TCTATCGTTT
sacCer3_chrXIV_292054_292154_- 21 4.61e-06 TTCAACAGAC CTTCCTTCTTCTTTCTACTGATCTATTCT GTAAATATGT
sacCer3_chrXVI_719172_719272_- 2 5.09e-06 T TTTCTTTTTCCATTTTCTTTCTGTGTGAC TCCCCTATGA
sacCer3_chrXIII_294978_295078_+ 5 5.09e-06 AACA ATCTCGTTTATTTATTATTTTTCTTTATA TCTATAGCCC
sacCer3_chrXI_115358_115458_- 44 5.62e-06 ATATGATTTT CTCTATTCATTTTTTAGTTTTTTTTGATA CATAAGCGAA
sacCer3_chrIV_334001_334101_- 14 5.62e-06 ACAGACAAGT CATTCTTTTCTTTCTTTTTGACCTTTATC ATAATTTTCT
sacCer3_chrXIII_634474_634574_+ 1 5.62e-06 TCTTTTTTCGCCTTCATGTTTTATATATT ATATAAATTT
sacCer3_chrIX_231421_231521_- 32 5.62e-06 TTTTGACGTT CATCTTGTCCTTTTTATTTCCTCATCATC GAACCCTTCA
sacCer3_chrXV_842458_842558_+ 37 6.19e-06 AAGTAGACCA ATTTTTTTTGTTCCTAGCTTTTCATTATT GAAATCTAAT
sacCer3_chrVII_644592_644692_+ 15 6.19e-06 AGTAACATTT TGCTTGCTTTTTTTCTCCGTTTTTGTTTC TTTTACTCTG
sacCer3_chrXI_436805_436905_+ 43 6.19e-06 AAATATATAT CTTTTTCTTTCTTTTTCTTAGTCAGGATT GTCGTTTAGC
sacCer3_chrIV_432989_433089_- 36 6.82e-06 TTATTCTTAA TTTTTTCTTCTTTCCTTTTTGTAACAATT TCAATTATTG
sacCer3_chrII_333867_333967_+ 69 8.25e-06 CCAGACTTGG TTTTTTTCTCTCTTTAGTAATTGTTTCTA TAT
sacCer3_chrII_110023_110123_- 4 8.25e-06 AGC TTTTTTTCTGTCGCTACTTCATTCACACA AATCATCTCA
sacCer3_chrXVI_242458_242558_- 43 1.09e-05 ATAACATCTA CTTTTTACTCTACCTACTGGTTCACTACC TCCCAATCAG
sacCer3_chrII_557902_558002_+ 20 1.09e-05 TGACTGATTA CTCTCTACCCATTCTTTTTGCTTTAAACT CATTTCCAAA
sacCer3_chrVIII_191821_191921_+ 39 1.19e-05 GACTCCTCGT TACTACTCTATCTCTTCCTCTTCTCTGTC TGAAAAGCAA
sacCer3_chrVII_559616_559716_- 31 1.30e-05 GGCCTAGCTT TCCTTGTTACTATTCTATTATTATATTTT ATTGGCTGCA
sacCer3_chrIV_1233184_1233284_- 9 1.56e-05 ACATTGAA CTATTTTCTTACTTTATTCTTTTTTCATA TGATTTCTTA
sacCer3_chrIV_1492813_1492913_- 43 2.20e-05 GAATGATATT TTCCCTTTCCTATATTTGACTTTTGTTCT AAAAGTTATT
sacCer3_chrIV_592860_592960_+ 39 2.39e-05 CCACAGGATA TTCTTTCTAAACTCTATCTTCTCTTGGCA AGAGTGTTCG
sacCer3_chrX_317003_317103_+ 26 2.39e-05 CAATAGGCTT TGCGCTGTTCTTCTCTCCTCTTTTGTAAA TAGTTTACCT
sacCer3_chrX_521640_521740_- 5 2.39e-05 TACG TTGCTGTCCTCCTCTGCCTGCTGTACATA TCGACGCCCC
sacCer3_chrXVI_876005_876105_+ 36 2.59e-05 GCAGATACTG CCCTTTTTCAATCCCATTCCTTTTCTCAT TGTATGTACG
sacCer3_chrVIII_392572_392672_- 49 2.82e-05 AGGATTTCAG TTATTTTCGTACTCATTTTCGTAATTTTT TTTATGACAT
sacCer3_chrXII_441308_441408_+ 33 3.59e-05 GTGTTCTACT TTCTGTTTCTATTACTATTATTATTTTAA TTGGTTATTT
sacCer3_chrII_394835_394935_+ 44 3.59e-05 TGTCGTTAAT ATCTCTTTTATTTCTTATTGTTACTATAT TATTACTGTT
sacCer3_chrVII_22099_22199_+ 42 3.88e-05 TCCATATAGA TTCTATTTCATATTTTATAGTTATTTATT CTTTAGTAAT
sacCer3_chrXVI_883281_883381_+ 28 3.88e-05 GTAGTAATTC TTTCCGTCATTGCTCATCTCTTCAACACA AACCATGAAT
sacCer3_chrII_260488_260588_+ 57 4.54e-05 GCTTTTCAAA TATTTGCTCCCTCTCAATTCCTACCTACC TGGGTCAAAG
sacCer3_chrIV_264338_264438_- 21 4.90e-05 ATAACTCCAT TTGTCTATTCTATCTACCCGTTCTATCCT TACTACTAGA
sacCer3_chrXIII_833268_833368_- 36 4.90e-05 TAGAATTAGC ATTTATTTTTCTCCATATTCTTATTCTAT AGGATGTAAA
sacCer3_chrII_556467_556567_+ 26 5.70e-05 GAACTAATAA TTCCCTTCGTTTGATAATTTATCATTTTC CTTTTCTGTT
sacCer3_chrVII_418547_418647_+ 59 7.11e-05 ATACATATAC TGCTGGTGTTAATTTTTTTTGTCTGTCTC ACGTAAAATC
sacCer3_chrXV_797578_797678_+ 53 7.64e-05 ATCACATCAC TTTCACTCTCACCTTAGTCGTTCTTTATC AACCAAAAAT
sacCer3_chrII_668411_668511_- 12 8.21e-05 CTTCCGAGTC CTTTATTCGGTCTTTTTTTATTTTTCAAG ATTAACTGTA
sacCer3_chrVII_974709_974809_- 10 8.21e-05 TTTAGGTAA TCCCTTCCACCTTTCTATATTTTATGATA CTATCCAAAC
sacCer3_chrII_419076_419176_- 43 8.21e-05 ACAAAGCACA AATTTTACTCATTCTACCGGTTCTTTCTT GCAAAGCGCA
sacCer3_chrX_121873_121973_+ 65 9.45e-05 CCATAAAATG TTTTTTTTATAACTAATTTTCTGTATATC ATTATCT
sacCer3_chrVIII_312134_312234_+ 27 1.09e-04 TGGTACTGGA TTACTTTCATTCCTCAACTATTAACCTCT CTATCACATA

Block Diagrams

The height of the motif "block" is proportional to -log(p-value), truncated at the height for a motif with a p-value of 1e-10.
Click on any row to highlight sequence in all motifs. Mouse over the center of the motif blocks to see more information.

Name Lowest p-value Motif Location
sacCer3_chrII_556467_556567_+ 5.70e-05
sacCer3_chrIX_312444_312544_+ 2.03e-07
sacCer3_chrVII_905741_905841_+ 1.29e-06
sacCer3_chrXI_356613_356713_+ 2.76e-06
sacCer3_chrVII_559616_559716_- 1.30e-05
sacCer3_chrVII_395909_396009_- 8.10e-07
sacCer3_chrIV_600891_600991_+ 2.69e-09
sacCer3_chrIV_1233184_1233284_- 1.56e-05
sacCer3_chrV_141699_141799_+ 2.76e-06
sacCer3_chrXIII_294978_295078_+ 5.09e-06
sacCer3_chrXIII_226705_226805_+ 2.64e-07
sacCer3_chrXVI_326547_326647_+ 3.01e-07
sacCer3_chrV_79209_79309_+ 2.22e-09
sacCer3_chrXIII_833268_833368_- 4.90e-05
sacCer3_chrXII_150237_150337_+ 1.35e-07
sacCer3_chrXII_795457_795557_- 4.99e-07
sacCer3_chrXV_633144_633244_- 3.77e-06
sacCer3_chrXVI_308592_308692_- 3.43e-07
sacCer3_chrIV_233877_233977_+ 1.02e-06
sacCer3_chrX_521640_521740_- 2.39e-05
sacCer3_chrII_557902_558002_+ 1.09e-05
sacCer3_chrX_317003_317103_+ 2.39e-05
sacCer3_chrII_419076_419176_- 8.21e-05
sacCer3_chrXII_422276_422376_- 4.17e-06
sacCer3_chrXIV_292054_292154_- 4.61e-06
sacCer3_chrIV_432989_433089_- 6.82e-06
sacCer3_chrXI_163552_163652_- 9.11e-07
sacCer3_chrIV_340505_340605_- 2.22e-09
sacCer3_chrXI_436805_436905_+ 6.19e-06
sacCer3_chrXI_64260_64360_+ 9.99e-11
sacCer3_chrXVI_242458_242558_- 1.09e-05
sacCer3_chrIV_45938_46038_+ 2.23e-06
sacCer3_chrXVI_883281_883381_+ 3.88e-05
sacCer3_chrII_260488_260588_+ 4.54e-05
sacCer3_chrIV_1492813_1492913_- 2.20e-05
sacCer3_chrIV_45894_45994_+ 2.23e-06
sacCer3_chrX_228824_228924_- 1.44e-06
sacCer3_chrII_110023_110123_- 8.25e-06
sacCer3_chrX_121873_121973_+ 9.45e-05
sacCer3_chrII_394835_394935_+ 3.59e-05
sacCer3_chrVII_482592_482692_- 2.23e-06
sacCer3_chrXVI_876005_876105_+ 2.59e-05
sacCer3_chrII_680669_680769_- 9.11e-07
sacCer3_chrII_556313_556413_+ 2.64e-07
sacCer3_chrXIII_671751_671851_- 6.38e-07
sacCer3_chrVIII_191821_191921_+ 1.19e-05
sacCer3_chrVII_974709_974809_- 8.21e-05
sacCer3_chrIV_592860_592960_+ 2.39e-05
sacCer3_chrXV_775304_775404_+ 2.00e-06
sacCer3_chrII_668411_668511_- 8.21e-05
sacCer3_chrV_86255_86355_+ 8.10e-07
sacCer3_chrVII_644592_644692_+ 6.19e-06
sacCer3_chrXII_243439_243539_+ 4.61e-06
sacCer3_chrIX_231421_231521_- 5.62e-06
sacCer3_chrVII_418547_418647_+ 7.11e-05
sacCer3_chrXIII_634474_634574_+ 5.62e-06
sacCer3_chrVIII_504365_504465_- 1.61e-06
sacCer3_chrXII_1018024_1018124_- 1.15e-06
sacCer3_chrXIII_571187_571287_- 2.62e-08
sacCer3_chrXVI_821841_821941_+ 6.59e-08
sacCer3_chrII_488771_488871_- 8.10e-07
sacCer3_chrX_314036_314136_- 4.17e-06
sacCer3_chrXII_441308_441408_+ 3.59e-05
sacCer3_chrXVI_719172_719272_- 5.09e-06
sacCer3_chrIV_334001_334101_- 5.62e-06
sacCer3_chrXII_780960_781060_- 1.35e-07
sacCer3_chrXII_904439_904539_+ 3.07e-06
sacCer3_chrXVI_575103_575203_+ 1.80e-06
sacCer3_chrVII_22099_22199_+ 3.88e-05
sacCer3_chrVIII_392572_392672_- 2.82e-05
sacCer3_chrXV_426582_426682_- 8.12e-09
sacCer3_chrXI_64284_64384_+ 2.62e-10
sacCer3_chrXII_622016_622116_+ 4.61e-06
sacCer3_chrXV_842458_842558_+ 6.19e-06
sacCer3_chrIV_264338_264438_- 4.90e-05
sacCer3_chrXI_556212_556312_+ 6.38e-07
sacCer3_chrIII_162837_162937_- 1.55e-07
sacCer3_chrVIII_312134_312234_+ 1.09e-04
sacCer3_chrIV_929172_929272_+ 4.89e-08
sacCer3_chrXII_121851_121951_- 1.80e-06
sacCer3_chrXI_115358_115458_- 5.62e-06
sacCer3_chrXI_559189_559289_- 7.19e-07
sacCer3_chrXV_797578_797678_+ 7.64e-05
sacCer3_chrII_333867_333967_+ 8.25e-06
 
0
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Time 448.5 secs.

Motif 3

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Summary

Sequence Logo

E-value 8.9e-010
Width 21
Sites 23
show more
PNG LOGOS require CONVERT from ImageMagick; see MEME installation guide
StandardReverse Complement

Download LOGO
   Orientation:    SSC:    Format:    Width: cm    Height: cm   

Regular expression

[TA]G[GC][TC]G[GC][TC]G[CT][TC][AC][ACT][GA]G[AG][TA][GT][TCG][CA][GC][AC]

Further Analysis

Submit this motif to  
      
      
      
      
 Mouse-over buttons for more information.

Data Formats

View the motif in PSPM Format 
     PSSM Format 
     BLOCKS Format 
     FASTA Format 
     Raw Format 
     or Hide

Sites

Click on any row to highlight sequence in all motifs.

Name Start p-value Sites
sacCer3_chrI_139577_139677_- 70 2.47e-12 TGTACCAAGC TGGTGGTGCTCCAGGTGGCGC TGCAGGTGGT
sacCer3_chrXII_95631_95731_- 70 1.14e-10 TGTACCAAGC TGGTGGTGCTCCAGAAGGCGC AGCTCCAGGT
sacCer3_chrVII_883143_883243_- 60 3.01e-09 CATCCTCCAC CGGTGCTGCTAAGGCTGTCGG TAAGGTCTTG
sacCer3_chrVIII_239627_239727_+ 25 1.31e-08 TGTTAAGGTT AGGCGGTGCTATTGGATCCCC TCACTGGGGA
sacCer3_chrII_613283_613383_- 32 3.03e-08 TGAAGCACTA CGCTGGTGTCTTGGATGTCCA CTTCGTTTCC
sacCer3_chrX_383228_383328_+ 66 3.81e-08 TGTACGGAGG TGCTGATGGTTCTGGTGCCGC TGATTATGAC
sacCer3_chrVII_787349_787449_- 60 3.81e-08 AGGCTAAGTC CGCTGGTGTCCAAGGTTCCAA GGTTTCCAAG
sacCer3_chrXIV_303044_303144_+ 19 6.61e-08 ACGTTATGGA ATCTGGTGCTAAGGGTTGTGA AGTTGTTGTT
sacCer3_chrXII_813719_813819_+ 63 6.61e-08 CTACTAAGAT TGGTGCTGGTATGGGTGAACA AATGTTATCT
sacCer3_chrVI_253731_253831_- 69 1.37e-07 GTTTCAAGGA AGCCGCCGCTAAGGGTTTGAG AGATATCTAT
sacCer3_chrXV_648898_648998_- 57 2.02e-07 CCGGTTCTCG TGGTGGTGTCACCCAAGTCCG TGTCGAATTC
sacCer3_chrXV_1023013_1023113_- 77 2.95e-07 GTCGCCAGAC AGGCGGCCCCTAGGAATCCGA ATA
sacCer3_chrIV_846539_846639_- 1 2.95e-07 AGCCCGTGGTATGGATTTCCC AAACGTCCAC
sacCer3_chrX_146769_146869_+ 14 5.05e-07 ATGCCACTGT CAGTGGCGCCACGGAAGGATA GCGGGACTTT
sacCer3_chrXIII_888587_888687_+ 65 6.00e-07 CCTTATCCAT TGCCGCTGGTGTCGGTTTTGC TTTGGTTTAA
sacCer3_chrXVI_564127_564227_- 59 6.00e-07 TTGGCGTTTC TGGTGCAGTTCAGCATTTAGC GGGAATGAAG
sacCer3_chrIV_929812_929912_- 74 8.39e-07 AAATTGATGC TACTGTCGCTCAAGGTGTAGA AATTTC
sacCer3_chrVII_492382_492482_- 78 9.87e-07 GTATATCTGA TGGTGTTGTTGCGAATGCCCA GT
sacCer3_chrXI_243012_243112_- 5 1.16e-06 TACA AGCTGGCGTTAAAGATGATTC CACTTGTATT
sacCer3_chrIV_600891_600991_+ 45 1.25e-06 CTATCACATC TTCTGAAGCTCCAGAATCCGA CAACGGTACC
sacCer3_chrXI_543982_544082_- 62 1.46e-06 AATAAAATCT TGGTGGAGTTAAAGGATGGTG CTTTAAAGCC
sacCer3_chrII_492162_492262_- 73 1.46e-06 TCTCCATCGT TTTTGCTGCCATGGGTGTCAA CTTGGAA
sacCer3_chrI_150820_150920_- 72 6.73e-06 CTGATATTAT AGGCGACGCTAATCATTCATA CTCGGTTG

Block Diagrams

The height of the motif "block" is proportional to -log(p-value), truncated at the height for a motif with a p-value of 1e-10.
Click on any row to highlight sequence in all motifs. Mouse over the center of the motif blocks to see more information.

Name Lowest p-value Motif Location
sacCer3_chrXVI_564127_564227_- 6.00e-07
sacCer3_chrIV_600891_600991_+ 1.25e-06
sacCer3_chrVI_253731_253831_- 1.37e-07
sacCer3_chrVII_787349_787449_- 3.81e-08
sacCer3_chrII_492162_492262_- 1.46e-06
sacCer3_chrI_139577_139677_- 2.47e-12
sacCer3_chrXI_543982_544082_- 1.46e-06
sacCer3_chrVII_883143_883243_- 3.01e-09
sacCer3_chrX_383228_383328_+ 3.81e-08
sacCer3_chrXII_813719_813819_+ 6.61e-08
sacCer3_chrI_150820_150920_- 6.73e-06
sacCer3_chrXI_243012_243112_- 1.16e-06
sacCer3_chrXIII_888587_888687_+ 6.00e-07
sacCer3_chrXV_648898_648998_- 2.02e-07
sacCer3_chrVII_492382_492482_- 9.87e-07
sacCer3_chrIV_846539_846639_- 2.95e-07
sacCer3_chrXIV_303044_303144_+ 6.61e-08
sacCer3_chrIV_929812_929912_- 8.39e-07
sacCer3_chrX_146769_146869_+ 5.05e-07
sacCer3_chrII_613283_613383_- 3.03e-08
sacCer3_chrXV_1023013_1023113_- 2.95e-07
sacCer3_chrXII_95631_95731_- 1.14e-10
sacCer3_chrVIII_239627_239727_+ 1.31e-08
 
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Time 636.7 secs.

All Motifs

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Combined Block Diagrams

Non-overlapping sites with a p-value better than 0.0001.
The height of the motif "block" is proportional to -log(p-value), truncated at the height for a motif with a p-value of 1e-10.
Click on any row to highlight sequence in all motifs. The motif blocks have tool tips with more information.

Motif 1
Motif 2
Motif 3
Name Combined p-value Motif Location
sacCer3_chrII_556467_556567_+ 5.84e-02
sacCer3_chrIX_312444_312544_+ 2.21e-06
sacCer3_chrVII_905741_905841_+ 2.57e-04
sacCer3_chrXI_356613_356713_+ 2.28e-03
sacCer3_chrXVI_564127_564227_- 3.50e-05
sacCer3_chrVII_559616_559716_- 8.66e-04
sacCer3_chrVII_395909_396009_- 3.86e-05
sacCer3_chrIV_600891_600991_+ 6.27e-09
sacCer3_chrIV_1170148_1170248_+ 7.94e-02
sacCer3_chrIV_1233184_1233284_- 2.52e-02
sacCer3_chrIV_915979_916079_+ 1.13e-04
sacCer3_chrXII_644308_644408_+ 1.04e-04
sacCer3_chrII_244253_244353_+ 1.45e-02
sacCer3_chrXI_599029_599129_- 4.43e-02
sacCer3_chrVIII_75951_76051_+ 3.99e-03
sacCer3_chrV_141699_141799_+ 3.49e-03
sacCer3_chrII_536187_536287_+ 5.24e-04
sacCer3_chrIV_540425_540525_+ 6.04e-02
sacCer3_chrIV_603412_603512_+ 9.19e-05
sacCer3_chrXII_212101_212201_- 2.26e-02
sacCer3_chrVIII_392499_392599_- 3.80e-02
sacCer3_chrXIII_294978_295078_+ 9.02e-06
sacCer3_chrXIII_226705_226805_+ 9.32e-04
sacCer3_chrXI_80011_80111_- 5.88e-02
sacCer3_chrXVI_326547_326647_+ 9.36e-05
sacCer3_chrVI_80449_80549_- 7.80e-02
sacCer3_chrXI_159422_159522_- 2.00e-02
sacCer3_chrV_79209_79309_+ 5.96e-06
sacCer3_chrXIII_833268_833368_- 1.52e-03
sacCer3_chrII_768644_768744_+ 6.56e-02
sacCer3_chrXII_511615_511715_+ 1.96e-03
sacCer3_chrXI_339088_339188_- 8.67e-03
sacCer3_chrXVI_658942_659042_+ 3.97e-02
sacCer3_chrXIV_672121_672221_+ 3.87e-02
sacCer3_chrVII_858704_858804_- 7.63e-02
sacCer3_chrXII_380631_380731_+ 1.43e-02
sacCer3_chrVIII_212016_212116_+ 1.63e-02
sacCer3_chrVI_253731_253831_- 1.36e-04
sacCer3_chrXV_720393_720493_- 5.39e-02
sacCer3_chrVII_787349_787449_- 2.00e-04
sacCer3_chrXIV_621202_621302_- 7.67e-03
sacCer3_chrXVI_212786_212886_+ 4.42e-02
sacCer3_chrVIII_147788_147888_- 4.21e-02
sacCer3_chrV_546471_546571_+ 3.68e-03
sacCer3_chrII_177781_177881_- 1.43e-02
sacCer3_chrXII_150237_150337_+ 7.57e-05
sacCer3_chrII_236995_237095_+ 3.57e-02
sacCer3_chrXVI_876176_876276_- 4.26e-02
sacCer3_chrXII_795457_795557_- 2.02e-03
sacCer3_chrIV_1132891_1132991_+ 1.90e-02
sacCer3_chrXV_684081_684181_+ 5.18e-04
sacCer3_chrII_722332_722432_+ 9.25e-04
sacCer3_chrXV_476801_476901_+ 6.41e-02
sacCer3_chrII_492162_492262_- 2.37e-03
sacCer3_chrI_139577_139677_- 5.24e-08
sacCer3_chrXV_633144_633244_- 3.15e-03
sacCer3_chrXII_556383_556483_+ 6.57e-03
sacCer3_chrXVI_308592_308692_- 1.57e-05
sacCer3_chrIV_233877_233977_+ 1.80e-03
sacCer3_chrX_521640_521740_- 2.27e-03
sacCer3_chrXI_182838_182938_+ 7.08e-03
sacCer3_chrII_557902_558002_+ 4.02e-03
sacCer3_chrX_317003_317103_+ 7.61e-05
sacCer3_chrVII_647041_647141_- 2.56e-03
sacCer3_chrII_419076_419176_- 1.37e-02
sacCer3_chrIII_119154_119254_+ 1.21e-02
sacCer3_chrVIII_119831_119931_- 1.34e-02
sacCer3_chrXI_543982_544082_- 1.71e-05
sacCer3_chrIV_1399513_1399613_- 7.23e-02
sacCer3_chrXII_422276_422376_- 2.90e-04
sacCer3_chrXII_233460_233560_- 1.17e-01
sacCer3_chrVII_883143_883243_- 6.74e-06
sacCer3_chrIV_270000_270100_+ 7.69e-02
sacCer3_chrXIV_292054_292154_- 2.69e-05
sacCer3_chrXIII_445390_445490_- 3.19e-03
sacCer3_chrII_586486_586586_- 1.68e-03
sacCer3_chrIV_1035145_1035245_- 1.19e-02
sacCer3_chrXVI_600570_600670_- 2.02e-04
sacCer3_chrIV_432989_433089_- 1.61e-03
sacCer3_chrII_617922_618022_- 3.43e-02
sacCer3_chrXV_688642_688742_+ 4.44e-02
sacCer3_chrX_383228_383328_+ 9.34e-05
sacCer3_chrVIII_392523_392623_- 2.84e-02
sacCer3_chrII_729667_729767_- 2.06e-02
sacCer3_chrXI_163552_163652_- 1.28e-03
sacCer3_chrXI_42227_42327_+ 8.56e-03
sacCer3_chrVIII_164863_164963_- 8.05e-02
sacCer3_chrIV_192324_192424_+ 4.84e-02
sacCer3_chrIV_340505_340605_- 9.06e-06
sacCer3_chrXVI_533438_533538_+ 8.35e-02
sacCer3_chrXI_436805_436905_+ 5.92e-05
sacCer3_chrXII_813719_813819_+ 2.68e-04
sacCer3_chrXIV_397886_397986_- 9.30e-04
sacCer3_chrXIII_272833_272933_+ 2.42e-02
sacCer3_chrII_768698_768798_+ 7.04e-02
sacCer3_chrIV_378775_378875_- 1.66e-02
sacCer3_chrI_150820_150920_- 1.80e-02
sacCer3_chrXV_54506_54606_- 5.82e-04
sacCer3_chrXI_64260_64360_+ 5.98e-08
sacCer3_chrIV_285329_285429_- 1.07e-03
sacCer3_chrIV_1496008_1496108_- 1.26e-02
sacCer3_chrXVI_242458_242558_- 3.34e-03
sacCer3_chrVII_830185_830285_+ 2.93e-02
sacCer3_chrIV_45938_46038_+ 1.94e-04
sacCer3_chrX_651241_651341_+ 5.44e-02
sacCer3_chrXI_280939_281039_+ 3.42e-03
sacCer3_chrXII_371161_371261_+ 2.52e-02
sacCer3_chrXVI_883281_883381_+ 5.52e-02
sacCer3_chrX_246975_247075_+ 9.43e-03
sacCer3_chrII_260488_260588_+ 1.84e-02
sacCer3_chrXI_243012_243112_- 1.39e-04
sacCer3_chrXII_339635_339735_- 4.91e-02
sacCer3_chrVII_934307_934407_+ 4.03e-02
sacCer3_chrIV_1492813_1492913_- 3.35e-02
sacCer3_chrIII_23904_24004_- 1.04e-03
sacCer3_chrX_306368_306468_+ 6.16e-04
sacCer3_chrXIII_888587_888687_+ 2.69e-04
sacCer3_chrVII_252760_252860_+ 1.76e-02
sacCer3_chrIV_503889_503989_+ 9.72e-02
sacCer3_chrXIII_460701_460801_- 1.59e-03
sacCer3_chrXIV_379473_379573_+ 2.37e-02
sacCer3_chrIV_45894_45994_+ 1.94e-04
sacCer3_chrXI_183669_183769_+ 6.07e-02
sacCer3_chrVIII_410128_410228_+ 1.11e-02
sacCer3_chrX_228824_228924_- 3.71e-04
sacCer3_chrXII_259971_260071_- 7.68e-03
sacCer3_chrXV_648898_648998_- 3.63e-04
sacCer3_chrXIII_461872_461972_- 1.76e-02
sacCer3_chrIX_260897_260997_+ 2.24e-02
sacCer3_chrII_110023_110123_- 2.59e-05
sacCer3_chrX_121873_121973_+ 2.42e-02
sacCer3_chrXV_946007_946107_+ 7.82e-04
sacCer3_chrIX_144048_144148_+ 1.04e-02
sacCer3_chrIII_158886_158986_- 2.09e-03
sacCer3_chrXIV_694199_694299_- 2.03e-02
sacCer3_chrVII_492382_492482_- 2.28e-03
sacCer3_chrXII_695946_696046_- 5.91e-02
sacCer3_chrIV_840392_840492_+ 4.30e-02
sacCer3_chrII_394835_394935_+ 1.64e-02
sacCer3_chrI_139363_139463_- 2.93e-02
sacCer3_chrXII_573386_573486_- 1.86e-02
sacCer3_chrXIV_129364_129464_- 4.53e-02
sacCer3_chrIV_846539_846639_- 5.17e-04
sacCer3_chrXIII_695311_695411_+ 7.13e-03
sacCer3_chrXV_684110_684210_+ 5.18e-04
sacCer3_chrVII_482592_482692_- 9.33e-04
sacCer3_chrXVI_876005_876105_+ 1.59e-04
sacCer3_chrXIV_303044_303144_+ 3.71e-04
sacCer3_chrII_680669_680769_- 9.40e-04
sacCer3_chrII_556313_556413_+ 7.61e-04
sacCer3_chrVII_755492_755592_- 2.02e-02
sacCer3_chrXIII_671751_671851_- 1.70e-04
sacCer3_chrVIII_191821_191921_+ 1.50e-02
sacCer3_chrVII_974709_974809_- 3.34e-03
sacCer3_chrIV_592860_592960_+ 8.60e-04
sacCer3_chrII_608929_609029_+ 3.19e-04
sacCer3_chrXV_775304_775404_+ 2.91e-06
sacCer3_chrII_668411_668511_- 4.69e-04
sacCer3_chrV_86255_86355_+ 4.95e-04
sacCer3_chrVII_644592_644692_+ 1.46e-04
sacCer3_chrIV_67880_67980_- 7.94e-03
sacCer3_chrXII_243439_243539_+ 8.54e-04
sacCer3_chrVII_381450_381550_- 8.29e-03
sacCer3_chrXVI_224240_224340_- 3.29e-02
sacCer3_chrVIII_220521_220621_+ 1.18e-04
sacCer3_chrIX_231421_231521_- 6.62e-03
sacCer3_chrXII_735603_735703_- 4.29e-03
sacCer3_chrV_307200_307300_+ 6.58e-02
sacCer3_chrVII_418547_418647_+ 6.85e-04
sacCer3_chrXIII_634474_634574_+ 8.86e-04
sacCer3_chrVIII_504365_504465_- 4.85e-05
sacCer3_chrVII_755435_755535_- 6.55e-03
sacCer3_chrIV_929812_929912_- 1.59e-04
sacCer3_chrXII_1018024_1018124_- 3.49e-03
sacCer3_chrXIII_571187_571287_- 2.17e-07
sacCer3_chrXVI_821841_821941_+ 7.15e-05
sacCer3_chrV_517464_517564_+ 2.69e-02
sacCer3_chrIII_60735_60835_+ 1.30e-02
sacCer3_chrVIII_76030_76130_- 2.89e-04
sacCer3_chrVIII_342262_342362_+ 2.75e-03
sacCer3_chrII_488771_488871_- 1.64e-03
sacCer3_chrX_314036_314136_- 2.20e-04
sacCer3_chrXII_441308_441408_+ 1.53e-02
sacCer3_chrXVI_719172_719272_- 3.90e-03
sacCer3_chrIV_334001_334101_- 6.04e-03
sacCer3_chrXII_41180_41280_- 7.59e-03
sacCer3_chrI_56912_57012_- 1.31e-03
sacCer3_chrXII_131122_131222_- 2.01e-02
sacCer3_chrXII_780960_781060_- 2.43e-05
sacCer3_chrXV_414028_414128_+ 1.04e-03
sacCer3_chrXII_904439_904539_+ 4.26e-03
sacCer3_chrVII_268785_268885_- 2.66e-02
sacCer3_chrX_146769_146869_+ 1.05e-04
sacCer3_chrII_613283_613383_- 1.16e-04
sacCer3_chrXVI_575103_575203_+ 1.97e-05
sacCer3_chrVII_22099_22199_+ 4.88e-03
sacCer3_chrV_313806_313906_- 7.24e-02
sacCer3_chrII_735628_735728_- 1.79e-02
sacCer3_chrXIII_220713_220813_+ 1.30e-02
sacCer3_chrXV_1023013_1023113_- 9.65e-06
sacCer3_chrVIII_392572_392672_- 3.45e-02
sacCer3_chrXI_284572_284672_+ 3.61e-02
sacCer3_chrXIII_445444_445544_- 8.77e-03
sacCer3_chrIX_402760_402860_- 7.72e-03
sacCer3_chrXV_426582_426682_- 1.30e-05
sacCer3_chrXV_824411_824511_- 1.00e-01
sacCer3_chrXIII_636181_636281_- 3.07e-02
sacCer3_chrXI_64284_64384_+ 1.38e-07
sacCer3_chrXIII_21922_22022_- 1.70e-02
sacCer3_chrVI_160331_160431_+ 7.75e-02
sacCer3_chrXII_622016_622116_+ 6.98e-03
sacCer3_chrXV_842458_842558_+ 8.10e-03
sacCer3_chrXII_663215_663315_- 1.86e-02
sacCer3_chrIV_264338_264438_- 1.70e-02
sacCer3_chrXV_280161_280261_+ 7.21e-02
sacCer3_chrX_76528_76628_+ 1.98e-02
sacCer3_chrXIV_661711_661811_- 3.74e-03
sacCer3_chrIII_35863_35963_+ 1.78e-02
sacCer3_chrXIV_416695_416795_- 3.56e-02
sacCer3_chrX_638150_638250_- 5.48e-03
sacCer3_chrXIV_439474_439574_- 5.50e-02
sacCer3_chrIX_46859_46959_- 4.74e-03
sacCer3_chrXI_556212_556312_+ 1.48e-03
sacCer3_chrIII_162837_162937_- 1.65e-04
sacCer3_chrII_784956_785056_- 3.23e-03
sacCer3_chrXIII_220754_220854_+ 1.30e-02
sacCer3_chrV_207544_207644_- 5.91e-02
sacCer3_chrIV_929172_929272_+ 2.30e-04
sacCer3_chrII_598991_599091_- 5.95e-03
sacCer3_chrXII_121851_121951_- 3.48e-03
sacCer3_chrXI_131092_131192_+ 1.93e-03
sacCer3_chrIV_1225075_1225175_- 3.10e-02
sacCer3_chrIV_632874_632974_+ 2.95e-02
sacCer3_chrXI_115358_115458_- 4.97e-04
sacCer3_chrIV_926154_926254_- 7.59e-04
sacCer3_chrXIII_650819_650919_+ 1.06e-02
sacCer3_chrIV_1428247_1428347_- 2.90e-05
sacCer3_chrXII_95631_95731_- 9.96e-07
sacCer3_chrXI_559189_559289_- 1.79e-03
sacCer3_chrXV_797578_797678_+ 5.03e-02
sacCer3_chrVIII_239627_239727_+ 4.18e-05
sacCer3_chrII_333867_333967_+ 1.73e-02
sacCer3_chrXI_186301_186401_+ 6.60e-03
sacCer3_chrXIII_842208_842308_+ 1.34e-03
sacCer3_chrIV_130795_130895_- 1.76e-03
 
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Motif 1
Motif 2
Motif 3
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MEME version
4.9.1 (Release date: Fri Aug 23 16:49:42 2013 +1000)
Reference
Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994.
show training set...
Command line summary

Letter frequencies in dataset
A: 0.332   C: 0.172   G: 0.145   T: 0.351

Background letter frequencies (from ./background):
A: 0.342   C: 0.158   G: 0.158   T: 0.342

Stopping Reason
Stopped because nmotifs = 3 reached. Program ran on b07a18.
show model parameters...

Explanation of MEME Results

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The MEME results consist of

  • The overview of all discovered motifs.
  • Information on each of the motifs MEME discovered, including:
    1. A summary table showing the width, number of contributing sites, log likelihood ratio, statistical significance, information content and relative entropy of the motif.
    2. A sequence LOGO.
    3. Downloadable LOGO files suitable for publication.
    4. A regular expression describing the motif.
    5. Some further analysis that can be performed on the motif.
    6. A list of data formats describing the motif.
    7. The contributing sites of the motif sorted by p-value and aligned with each other.
    8. The block diagrams of the contributing sites of the motif within each sequence in the training set.
  • A combined block diagram showing an optimized (non-overlapping) tiling of all of the motifs onto each of the sequences in the training set.
  • The version of MEME and the date it was released.
  • The reference to cite if you use MEME in your research.
  • A description of the sequences you submitted (the "training set") showing the name, "weight" and length of each sequence.
  • The command line summary detailing the parameters with which you ran MEME.
  • The reason why MEME stopped and the name of the CPU on which it ran.
  • This explanation of how to interpret MEME results.

Motifs

For each motif that it discovers in the training set, MEME prints the following information:

Summary Table

This summary table gives the main attributes of the motif.

E-value
The statistical significance of the motif. MEME usually finds the most statistically significant (low E-value) motifs first. The E-value of a motif is based on its log likelihood ratio, width, sites, the background letter frequencies (given in the command line summary), and the size of the training set. The E-value is an estimate of the expected number of motifs with the given log likelihood ratio (or higher), and with the same width and site count, that one would find in a similarly sized set of random sequences. (In random sequences each position is independent with letters chosen according to the background letter frequencies.)
Width
The width of the motif. Each motif describes a pattern of a fixed with as no gaps are allowed in MEME motifs.
Sites
The number of sites contributing to the construction of the motif.
Log Likelihood Ratio
The log likelihood ratio of the motif.The log likelihood ratio is the logarithm of the ratio of the probability of the occurrences of the motif given the motif model (likelihood given the motif) versus their probability given the background model (likelihood given the null model). (Normally the background model is a 0-order Markov model using the background letter frequencies, but higher order Markov models may be specified via the -bfile option to MEME.)
Information Content
The information content of the motif in bits. It is equal to the sum of the uncorrected information content, R(), in the columns of the LOGO. This is equal relative entropy of the motif relative to a uniform background frequency model.
Relative Entropy
The relative entropy of the motif, computed in bits and relative to the background letter frequencies given in the command line summary. It is equal to the log-likelihood ratio (llr) divided by the number of contributing sites of the motif times 1/ln(2),

re = llr / (sites * ln(2)).
Sequence LOGO

MEME motifs are represented by position-specific probability matrices that specify the probability of each possible letter appearing at each possible position in an occurrence of the motif. These are displayed as "sequence LOGOS", containing stacks of letters at each position in the motif. The total height of the stack is the "information content" of that position in the motif in bits. The height of the individual letters in a stack is the probability of the letter at that position multiplied by the total information content of the stack.

Note: The MEME LOGO differs from those produced by the Weblogo program because a small-sample correction is NOT applied. However, MEME LOGOs in PNG and encapsulated postscript (EPS) formats with small-sample correction (SSC) are available by clicking on the download button with "SSC" set to "on" under Download LOGO. The MEME LOGOs without small sample correction are similarly available. Error bars are included in the LOGOs with small-sample correction.

Modern web browsers supporting the canvas element and it's text manipulation functions as described in the html 5 standard, can render the sequence LOGOs without needing the images. The browsers which work with this feature are:

  • Firefox 3.5 and above
  • Safari 4 and above
  • Google Chrome 4 and above

Unfortunately Internet Explorer 8 does not support any html 5 features.

The information content of each motif position is computed as described in the paper by Schneider and Stephens, "Sequence Logos: A New Way to Display Consensus Sequences" but the small-sample correction, e(n), is set to zero for the LOGO displayed in the MEME output. The corrected information content of position i is given by 

            R(i) for amino acids   = log2(20) - (H(i) + e(n))   (1a) 
            R(i) for nucleic acids =    2    - (H(i) + e(n))    (1b)

where H(i) is the entropy of position i,

            H(l) = - (Sum f(a,i) * log2[ f(a,i) ]).             (2)

Here, f(a,i) is the frequency of base or amino acid a at position i, and e(n) is the small-sample correction for an alignment of n letters. The height of letter a in column i is given by 

            height = f(a,i) * R(i)                              (3)

The approximation for the small-sample correction, e(n), is given by:

            e(n) = (s-1) / (2 * ln(2) * n),                     (4)

where s is 4 for nucleotides, 20 for amino acids, and n is the number of sequences in the alignment.

The letters in the logos are colored as follows.
For DNA sequences, the letter categories contain one letter each.

NUCLEIC ACIDS COLOR
A RED
C BLUE
G ORANGE
T GREEN

For proteins, the categories are based on the biochemical properties of the various amino acids.

AMINO ACIDS COLOR PROPERTIES
A, C, F, I, L, V, W and M BLUE Most hydrophobic[Kyte and Doolittle, 1982]
NQST GREEN Polar, non-charged, non-aliphatic residues
DE MAGENTA Acidic
KR RED Positively charged
H PINK  
G ORANGE  
P YELLOW  
Y TURQUOISE  

J. Kyte and R. Doolittle, 1982. "A Simple Method for Displaying the Hydropathic Character of a Protein", J. Mol Biol. 157, 105-132.

Note: the "text" output format of MEME preserves the historical MEME format where LOGOS are replaced by a simplified probability matrix, a relative entropy plot, and a multi-level consensus sequence.

Download LOGO

Logos can be generated on the fly by the meme webservice and you may specify a number of options to customize them to your needs. The options are:

Orientation
Only valid for nucleotide motifs. Generate the standard view or the reverse complemented view of the motif.
SSC
Use small sample correction and show errorbars on the image. Small sample correction is used by the Weblogo program.
Format
The format of the generated image. If the image is to be used on the web then png is recommend. If the image is to be published then eps is recommended.
Width
The width of the generated image in centimetres.
Height
The height of the generated image in centimetres.

Regular Expression

This is a regular expression (RE) describing the motif. In each column, all letters with observed frequencies greater than 0.2 are shown; less-frequent letters are not included in the RE. MEME regular expressions are interpreted as follows: single letters match that letter; groups of letters in square brackets match any of the letters in the group. Regular expressions can be used for searching for the motif in sequences (using, for example, PatMatch) but the search accuracy will usually be better with the PSSM (using, for example MAST.)

Further Analysis

Either as a group or individually the motifs have a number of options for further analysis.

MAST
Finds the best matching positions for a set of motifs in each sequence provided to it, ranked by the combined score of each sequence. For more information about MAST please read the introduction.
FIMO
Finds all matches for a motif. For more information about FIMO please read the introduction.
TOMTOM
Compares a single motif to a database of motifs. For more information about TOMTOM please read the introduction.
GOMO
Identifies possible roles of DNA binding motifs. For more information about GOMO please read the introduction.
BLOCKS
Submit to Blocks Multiple Alignment Processor where you can do several things like create phylogeny trees and search the blocks against a database of other blocks (protein only). For more information about BLOCKS Multiple Alignment Processor please visit the website.
Data Formats

The extracted data is avaliable in the following formats.

PSPM Format
The motif itself is a position-specific probability matrix giving, for each position in the pattern, the observed frequency ("probability") of each possible letter. The probability matrix is printed "sideways"--columns correspond to the letters in the alphabet (in the same order as shown in the simplified motif) and rows corresponding to the positions of the motif, position one first. The motif is preceded by a line starting with "letter-probability matrix:" and containing the length of the alphabet, width of the motif, number of occurrences of the motif, and the E-value of the motif.
Note: Earlier versions of MEME gave the posterior probabilities--the probability after applying a prior on letter frequencies--rather than the observed frequencies. These versions of MEME also gave the number of possible positions for the motif rather than the actual number of occurrences. The output from these earlier versions of MEME can be distinguished by "n=" rather than "nsites=" in the line preceding the matrix.
PSSM Format
The position-specific scoring matrix corresponding to the motif is printed for use by database search programs such as MAST. This matrix is a log-odds matrix calculated by taking 100 times the log (base 2) of the ratio p/f at each position in the motif where p is the probability of a particular letter at that position in the motif, and f is the background frequency of the letter (given in the command line summary section.) This is the same matrix that is used above in computing the p-values of the occurrences of the motif in the Sites and Block Diagrams sections. The scoring matrix is printed "sideways"--columns correspond to the letters in the alphabet (in the same order as shown in the simplified motif) and rows corresponding to the positions of the motif, position one first. The scoring matrix is preceded by a line starting with "log-odds matrix:" and containing the length of the alphabet, width of the motif, number of characters in the training set, the scoring threshold (obsolete) and the motif E-value.
Note: The probability p used to compute the PSSM is not exactly the same as the corresponding value in the Position Specific Probability Matrix (PSPM). The values of p used to compute the PSSM take into account the motif prior, whereas the values in the PSPM are just the observed frequencies of letters in the motif sites.
BLOCKS Format
For use with BLOCKS tools.
FASTA Format
The FASTA format as described here.
Raw Format
Just the sites of the sequences that contributed to the motif. One site per line.
Sites

MEME displays the occurrences (sites) of the motif in the training set. The sites are shown aligned with each other, and the ten sequence positions preceding and following each site are also shown. Each site is identified by the name of the sequence where it occurs, the strand (if both strands of DNA sequences are being used), and the position in the sequence where the site begins. When the DNA strand is specified, '+' means the sequence in the training set, and '-' means the reverse complement of the training set sequence. (For '-' strands, the 'start' position is actually the position on the positive strand where the site ends.) The sites are listed in order of increasing statistical significance (p-value). The p-value of a site is computed from the the match score of the site with the position specific scoring matrix for the motif. The p-value gives the probability of a random string (generated from the background letter frequencies) having the same match score or higher. (This is referred to as the position p-value by the MAST algorithm.)

Block Diagrams

The occurrences of the motif in the training set sequences are shown as coloured blocks on a line. One diagram is printed for each sequence showing all the sites contributating to that motif in that sequence. The sequences are listed in the same order as in the input to make it easier to compare multiple block diagrams. Additionally the best p-value for the sequence/motif combination is listed though this may not be in ascending order as with the sites. The p-value of an occurrence is the probability of a single random subsequence the length of the motif, generated according to the 0-order background model, having a score at least as high as the score of the occurrence. When the DNA strand is specified '+', it means the motif appears from left to right on the sequence, and '-' means the motif appears from right to left on the complementary strand. A sequence position scale is shown at the end of each table of block diagrams.

Combined Block Diagrams

The motif occurrences shown in the motif summary may not be exactly the same as those reported in each motif section because only motifs with a position p-value of 0.0001 that don't overlap other, more significant motif occurrences are shown.

See the documentation for MAST output for the definition of position and combined p-values.