MEME

For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net.

If you use MEME in your research, please cite the following paper:
Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994.

Discovered Motifs   |   Block diagrams of Motifs   |   Program information   |   Explanation

Discovered Motifs

Motif Overview

Motif 1
  • 1.2e-127
  • 307 sites
Motif 1 Logo Motif 1 Logo
Motif 2
  • 1.7e-015
  • 74 sites
Motif 2 Logo Motif 2 Logo
Motif 3
  • 7.1e-011
  • 45 sites
Motif 3 Logo Motif 3 Logo

Further Analysis

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Motif 1

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Summary

Sequence Logo

E-value 1.2e-127
Width 8
Sites 307
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PNG LOGOS require CONVERT from ImageMagick; see MEME installation guide

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   Orientation:    SSC:    Format:    Width: cm    Height: cm   

Regular expression

[AT]GATAA[GA][AG]

Further Analysis

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Data Formats

View the motif in PSPM Format 
     PSSM Format 
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Sites

Click on any row to highlight sequence in all motifs.

Name Strand Start p-value Sites
hg19_chrX_109652326_109652826_+ - 26 1.99e-05 GCATGTCTCA AGATAAGA GGACTGTAGG
hg19_chr14_20950455_20950955_+ + 82 1.99e-05 TGGACATCAT AGATAAGA TGTTACGGAG
hg19_chr14_89921739_89922239_+ - 42 1.99e-05 CCCTGCTGTC AGATAAGA AGCTGATACT
hg19_chr8_125576737_125577237_+ + 33 1.99e-05 AGTCGACAGA AGATAAGA AACAAACCAA
hg19_chr1_26180840_26181340_+ + 67 1.99e-05 AAAAAGGGGG AGATAAGA GGTATAAGTG
hg19_chr6_125404280_125404780_+ + 45 1.99e-05 ACTTTTCAGA AGATAAGA GTTCACTGAA
hg19_chr3_155546258_155546758_+ + 50 1.99e-05 CCTTGTGAGT AGATAAGA CCACAGGCGT
hg19_chr11_65403555_65404055_+ - 88 1.99e-05 GAGAC AGATAAGA CAGCAGAGGC
hg19_chr3_98322450_98322950_+ - 11 1.99e-05 GCAGAACCCT AGATAAGA ACCCTAGATC
hg19_chr6_99423174_99423674_+ + 46 1.99e-05 TGCTCGCCAT AGATAAGA CAAAGCCTGT
hg19_chr10_11377035_11377535_+ - 81 1.99e-05 CTGGAAGGAG AGATAAGA CAGAGGGAGC
hg19_chr13_32612391_32612891_+ + 78 1.99e-05 TTGTGGAACA AGATAAGA CACAACTTAA
hg19_chr7_38947354_38947854_+ + 14 1.99e-05 CTCTAGTGTT AGATAAGA GACTTTGTTA
hg19_chr5_145238407_145238907_+ - 34 1.99e-05 AGTCAAGATG AGATAAGA CATTTTTGTG
hg19_chr17_25773805_25774305_+ + 82 1.99e-05 GGCAATTTTC AGATAAGA ACCCTGAGGC
hg19_chr14_103987799_103988299_+ + 42 1.99e-05 GGGCGCGCGC AGATAAGA GCGCGACGGC
hg19_chr17_75066546_75067046_+ + 86 1.99e-05 GGGCACAAAG AGATAAGA GGGAGAC
hg19_chr5_143208163_143208663_+ + 52 1.99e-05 GGCCTACAAT AGATAAGA CAGCATGAGA
hg19_chr1_18860857_18861357_+ - 62 1.99e-05 TGGGAGTGAA AGATAAGA CTCAGAGAGC
hg19_chr6_3251694_3252194_+ - 34 1.99e-05 TATGAAGATC AGATAAGA GAGCCGAATG
hg19_chr20_44480963_44481463_+ + 9 1.99e-05 CCACAAAC AGATAAGA GCTCTCCCCT
hg19_chr10_63603726_63604226_+ - 11 1.99e-05 TGCACTTTTT AGATAAGA AAAGGTAGCA
hg19_chr12_8763411_8763911_+ + 74 1.99e-05 CTGGAAGTAT AGATAAGA AGGATGTGGC
hg19_chr3_58038039_58038539_+ - 41 1.99e-05 TTCTCTAAAC AGATAAGA CTGAAGTCAG
hg19_chr2_220037620_220038120_+ + 43 1.99e-05 GCAGGAGAGG AGATAAGA AAGAAGGAAT
hg19_chr16_27257137_27257637_+ + 91 1.99e-05 GGATGAAGGC AGATAAGA GA
hg19_chrY_14611829_14612329_+ - 41 1.99e-05 TGGTGGGTGG AGATAAGA CATGTTGTTC
hg19_chr6_89600828_89601328_+ + 38 1.99e-05 TGAGAGCAAC AGATAAGA GCAATGTATG
hg19_chr6_3348037_3348537_+ - 24 1.99e-05 GCCTGCAGTG AGATAAGA GAGCCAGTGA
hg19_chr18_33441972_33442472_+ + 73 1.99e-05 CACAGTGCAC AGATAAGA AAGGCTACAC
hg19_chr11_3505322_3505822_+ + 42 1.99e-05 CGAGGTGCAG AGATAAGA GGGGGTGGGG
hg19_chr4_174799813_174800313_+ + 64 1.99e-05 CTGATGCCCA AGATAAGA GGTGATGGTG
hg19_chr17_26366214_26366714_+ + 88 1.99e-05 TGGAAGGGAG AGATAAGA CCCTT
hg19_chr12_69006898_69007398_+ + 93 1.99e-05 AAAAAAAAGG AGATAAGA
hg19_chr4_159066709_159067209_+ + 30 1.99e-05 TGTCTGCAGC AGATAAGA GCTCAGAAAA
hg19_chr5_158637855_158638355_+ - 42 3.72e-05 GAGGGGATCA AGATAAGG CCTTGCTATC
hg19_chr8_96240989_96241489_+ + 67 3.72e-05 AGCAGGGAGA AGATAAGG CAGGGAGATA
hg19_chr9_100536064_100536564_+ - 32 3.72e-05 TGTGCTCTAA AGATAAGG GGCTCCTGGG
hg19_chr22_38569297_38569797_+ - 65 3.72e-05 GGGTGAGCAG AGATAAGG AAAACGGCCA
hg19_chr5_126362866_126363366_+ + 64 3.72e-05 TGCCTCATGA AGATAAGG ATTCTACCTT
hg19_chr5_177984370_177984870_+ - 7 3.72e-05 TGCAGCAGGC AGATAAGG AAGGCC
hg19_chr3_152048151_152048651_+ - 69 3.72e-05 GTGAAATTGC AGATAAGG GGGGATTACT
hg19_chr1_156832808_156833308_+ - 33 3.72e-05 GGAGACAGAC AGATAAGG ACAGAGAGCT
hg19_chr9_32884474_32884974_+ + 35 3.72e-05 TGCATTTTGT AGATAAGG AAAGGGAAAT
hg19_chr8_67017874_67018374_+ + 38 3.72e-05 GCAGCTTCAC AGATAAGG GCAGTCTGAC
hg19_chr7_111172036_111172536_+ - 53 3.72e-05 GTAGCAAAGT AGATAAGG AACAGCAAAG
hg19_chr10_9867249_9867749_+ + 76 3.72e-05 CTGCAGGCAC AGATAAGG GAACTTGCAC
hg19_chr6_43937191_43937691_+ + 65 3.72e-05 ATGGTGGGCG AGATAAGG CAGTAACATA
hg19_chr15_63837585_63838085_+ - 59 3.72e-05 ACTTTTTGTC AGATAAGG ACTATATTTA
hg19_chr3_186606190_186606690_+ - 48 3.72e-05 TGACTGGAAG AGATAAGG GTCTAATGGG
hg19_chr13_20780756_20781256_+ + 57 3.72e-05 GTATCAGAGA AGATAAGG GAGAACATTT
hg19_chr10_81658103_81658603_+ - 41 3.72e-05 TTAGATATTC AGATAAGG TATACATCAC
hg19_chr7_93574989_93575489_+ - 74 3.72e-05 TGGAAAAGAA AGATAAGG GAGGAATCAG
hg19_chr1_226942349_226942849_+ - 60 3.72e-05 ACGCTGAGAG AGATAAGG AAGCTGCAGA
hg19_chr2_238389664_238390164_+ - 75 3.72e-05 TGGGTTGTGC AGATAAGG AAGCTGAGGC
hg19_chr2_202310962_202311462_+ - 43 3.72e-05 TTATCAGAGG AGATAAGG AACAGCTCTA
hg19_chr8_41872577_41873077_+ + 77 3.72e-05 GAGGACAGAC AGATAAGG AGGTAACTAT
hg19_chr12_3299283_3299783_+ - 45 3.72e-05 GGGGAGGATG AGATAAGG CAGACCGCCG
hg19_chr12_6454612_6455112_+ + 88 3.72e-05 AAGTGAATGG AGATAAGG AGACA
hg19_chr7_135145965_135146465_+ - 70 3.72e-05 CTGTGAACTG AGATAAGG ACAATTCGAT
hg19_chr4_7083465_7083965_+ + 60 3.72e-05 TGTCAGCCAC AGATAAGG GGCTACAGAG
hg19_chr6_78083485_78083985_+ - 80 3.72e-05 TGTGAGAGTC AGATAAGG GAAGTGGTTG
hg19_chr5_177634960_177635460_+ + 79 3.72e-05 GTTGGCAGCC AGATAAGG TGGGACAGGT
hg19_chr2_113638789_113639289_+ - 24 3.72e-05 GGATCAAAAG AGATAAGG CACACAAAAG
hg19_chr6_11931362_11931862_+ - 89 3.72e-05 TTAG AGATAAGG TCAGATGGAA
hg19_chr14_106591439_106591939_+ - 9 3.72e-05 TGGTGGAAGG AGATAAGG AACGTGGA
hg19_chr8_86878790_86879290_+ + 29 3.72e-05 TGTGGTTTCC AGATAAGG GCTGCAGCCC
hg19_chr17_70897778_70898278_+ + 84 3.72e-05 GAGGTCATAA AGATAAGG CCATCTTGG
hg19_chr10_88439144_88439644_+ + 56 3.72e-05 CTGTGCAGGA AGATAAGG ACAGCCCTGG
hg19_chr8_8635125_8635625_+ + 30 3.72e-05 GCACCCAGCC AGATAAGG ACAAAACCAG
hg19_chr12_57933020_57933520_+ + 60 3.72e-05 TGGGCCACAT AGATAAGG CTCCCACTTC
hg19_chr4_87837433_87837933_+ - 51 3.72e-05 TGCTGTTGGC AGATAAGG TGCTCAGCAA
hg19_chr1_62190981_62191481_+ + 36 3.72e-05 TTGGGTTTAC AGATAAGG AACAAGGCTC
hg19_chr8_126347720_126348220_+ + 86 5.45e-05 TTCCAAAGAA AGATAAGC ATATGTC
hg19_chr13_51185524_51186024_+ + 56 5.45e-05 TCCATTCAGC AGATAAGC CACCAAATGG
hg19_chr3_4547521_4548021_+ + 59 5.45e-05 CATAACTATG AGATAAGC CCTCATTATC
hg19_chr16_57664343_57664843_+ + 66 5.45e-05 TGGAGGCGTG AGATAAGC TTGCTAACAG
hg19_chr17_1694368_1694868_+ + 55 5.45e-05 CTGTCCCTTG AGATAAGC CCTAGTGAGA
hg19_chr15_66097379_66097879_+ - 89 5.45e-05 GGCC AGATAAGC AGTACTAATG
hg19_chr2_202047549_202048049_+ + 55 5.45e-05 GGAAAAAGGC AGATAAGC AGTGATGACA
hg19_chrX_56306233_56306733_+ - 46 5.45e-05 TGGTCTTTGC AGATAAGC AAAGAGTCTT
hg19_chr1_224348000_224348500_+ - 31 5.45e-05 TGCATGTGGG AGATAAGC AGAGGATCCG
hg19_chr12_66734874_66735374_+ - 17 5.45e-05 GGACGAATGG AGATAAGC AGCGTGCTTG
hg19_chr5_72249377_72249877_+ - 26 5.45e-05 GGCAGAGCAT AGATAAGC TCCTGAGTGG
hg19_chr4_154059399_154059899_+ - 8 5.45e-05 CTGTCATTTT AGATAAGC CGCCAGC
hg19_chr2_202304826_202305326_+ + 41 5.45e-05 CTGAGAAACC AGATAAGC AGGTTATCAG
hg19_chr11_61734005_61734505_+ + 39 5.45e-05 TGGGACTTAG AGATAAGC AGAGCCGAGA
hg19_chr4_185726385_185726885_+ + 29 5.45e-05 AAGAAAGAAC AGATAAGC AGATTTCTTC
hg19_chrY_2728551_2729051_+ - 5 5.45e-05 AGCTCTTGCT AGATAAGC TATA
hg19_chr2_241505034_241505534_+ + 52 5.45e-05 TGGCCTCTCT AGATAAGC TCCTCATGAC
hg19_chr9_4922387_4922887_+ + 10 5.45e-05 AAACTAAAA AGATAAGC TATGTGGTTT
hg19_chr9_21333097_21333597_+ - 79 5.45e-05 GTACAGTTGG AGATAAGC TCTATGTCAT
hg19_chr3_47436004_47436504_+ + 49 5.45e-05 CACTGTCCTG AGATAAGC ATGTTTTGGT
hg19_chr14_65900848_65901348_+ - 63 5.45e-05 ATTAGCCCAG AGATAAGC CTGTCAGAGG
hg19_chr15_83668799_83669299_+ + 7 7.44e-05 GCATCT TGATAAGA AATTAGCTCC
hg19_chr6_37282534_37283034_+ - 1 7.44e-05 TGGGCCAGGG TGATAAGA
hg19_chr2_180652221_180652721_+ - 14 7.44e-05 GTTCTGCTTC TGATAAGA TTACACTGGA
hg19_chr21_43854056_43854556_+ + 46 7.44e-05 TGTTTTTTAC TGATAAGA GAGATGAAGT
hg19_chr2_47758666_47759166_+ + 76 7.44e-05 CTCACTCCTG TGATAAGA CAGAAGTTTC
hg19_chr20_60561810_60562310_+ + 1 7.44e-05 TGATAAGA AATGGTATCA
hg19_chr16_58893788_58894288_+ - 37 7.44e-05 GTGGTGTGTC TGATAAGA ACGGACAAAA
hg19_chr2_112793300_112793800_+ - 6 7.44e-05 AACTGTGTTC TGATAAGA TTGTA
hg19_chr6_116789373_116789873_+ - 42 7.44e-05 CCAGCAGTGC TGATAAGA GCCAGAACTG
hg19_chr6_5466913_5467413_+ + 80 7.44e-05 TGTGCAGGAA TGATAAGA GGCACATATT
hg19_chr1_153405797_153406297_+ - 15 7.44e-05 GAAGTTGAGC TGATAAGA CATGACTCAA
hg19_chr2_68993550_68994050_+ + 49 7.44e-05 CCAGAGCTGC TGATAAGA AAGAAGTAAC
hg19_chr3_170900781_170901281_+ + 67 7.44e-05 TGGCAGAGCC TGATAAGA AGTCAGATGG
hg19_chr5_77930370_77930870_+ - 47 7.44e-05 AGGCAGAAAT TGATAAGA ACTGTCTGTT
hg19_chr14_95846791_95847291_+ + 43 7.44e-05 AAATGAGAAA TGATAAGA AGACAGCTAA
hg19_chr6_168673226_168673726_+ + 52 7.44e-05 CTGTTGAAGC TGATAAGA GATAAACTCC
hg19_chr5_5882770_5883270_+ + 1 7.44e-05 TGATAAGA GGGGTGTGCA
hg19_chr20_4062008_4062508_+ + 62 7.44e-05 TTAGGGTTTC TGATAAGA AATCTGACGT
hg19_chr11_12199296_12199796_+ + 23 7.44e-05 ATCTCCAGGG TGATAAGA GTGTCTTTTG
hg19_chr1_52130423_52130923_+ + 45 7.44e-05 TGCTCTGTGA TGATAAGA TTCACGGCAG
hg19_chr13_32997738_32998238_+ + 27 7.44e-05 GTGTTTGGAG TGATAAGA AATTTTTGAA
hg19_chr11_10765641_10766141_+ + 51 7.44e-05 TCTTTGGAGA TGATAAGA AAAATATAAA
hg19_chr12_76945107_76945607_+ - 27 7.44e-05 CCAGTCACCA TGATAAGA ATGAGGAACA
hg19_chr14_78111853_78112353_+ + 1 7.44e-05 TGATAAGA AATTCCTCAC
hg19_chr5_68387010_68387510_+ - 90 7.44e-05 TAT TGATAAGA TGTTCCTGTG
hg19_chr1_8064722_8065222_+ - 43 7.44e-05 CTCAGACGCG TGATAAGA CTTGTCTGCA
hg19_chr7_129360132_129360632_+ + 48 1.35e-04 TTTTGGGTGC AGATAAAA CAAGCATGGT
hg19_chr3_183067208_183067708_+ - 44 1.35e-04 TGTTAAAAGG AGATAACA TCTGTTTCGT
hg19_chr6_37464514_37465014_+ + 46 1.35e-04 CCGGTTCCAC TGATAAGG TGACAAGATC
hg19_chr12_8849463_8849963_+ - 55 1.35e-04 TGTTGTGAAA AGATAAAA GAGTACAGTC
hg19_chr16_72587264_72587764_+ + 70 1.35e-04 TGAGGCTCTT AGATAACA GTCGTGTTAC
hg19_chr20_33707927_33708427_+ + 8 1.35e-04 AGTGTTG AGATAACA GGCGTGAGTC
hg19_chr6_111260575_111261075_+ + 90 1.35e-04 GTGTGAGGTT TGATAAGG TGT
hg19_chr6_118035324_118035824_+ - 58 1.35e-04 TTATTACTTG TGATAAGG AGTAAAAGGA
hg19_chr7_36967919_36968419_+ + 70 1.35e-04 TGCAACAGAG AGATAACA CCAACCCCTA
hg19_chrX_100615381_100615881_+ + 21 1.35e-04 CTTTCCTCCA AGATAAAA TATTCATCAC
hg19_chr2_217942564_217943064_+ + 34 1.35e-04 TGGGACTAGA AGATAAAA TGGGTCAATT
hg19_chr10_103348633_103349133_+ + 58 1.35e-04 GAGGCTTTCA AGATAACA ACTGGTGACT
hg19_chr18_42639662_42640162_+ + 68 1.35e-04 TGGACTCTGA AGATAAAA TAAAAGTTCA
hg19_chr17_34896478_34896978_+ + 77 1.35e-04 GGAGAGGGAA AGATAACA AAGTGAGGAG
hg19_chr3_158461315_158461815_+ + 88 1.35e-04 GTGGCAGCCT AGATAACA GGACA
hg19_chr6_14932652_14933152_+ - 58 1.35e-04 GGCCTGTCAT AGATAACA CCATATCTCA
hg19_chr12_57770860_57771360_+ + 28 1.35e-04 TCTGCTTGTA AGATAACA AAACTGGCTG
hg19_chrX_38663224_38663724_+ - 2 1.35e-04 GGCAGCACCG AGATAAAA G
hg19_chr6_7468659_7469159_+ - 14 1.35e-04 CCAGGAGCTG AGATAAAA GTGGGCACAC
hg19_chr18_33071458_33071958_+ + 42 1.35e-04 GGATGCAATA AGATAAAA TTAAAATGAT
hg19_chr19_52011233_52011733_+ - 48 1.35e-04 TGGTCGTCTC AGATAAAA TACAGGATGC
hg19_chr2_242071894_242072394_+ + 1 1.35e-04 TGATAAGG ACTCAGCCAG
hg19_chr7_37428580_37429080_+ - 10 1.35e-04 GACAAGGTAC AGATAACA GGGCACAGC
hg19_chr6_80865863_80866363_+ + 75 1.35e-04 TGCATTATAG AGATAACA TTCAAGTTGT
hg19_chr2_30414619_30415119_+ - 6 1.35e-04 GCTCCTCGTA AGATAACA AGGAG
hg19_chr20_31363992_31364492_+ - 27 1.35e-04 TGGCATTTCC AGATAACA TGGCCCCCAT
hg19_chr16_27442387_27442887_+ + 51 1.35e-04 TGGCGGGTGC AGATAACA AGCCCTGGCT
hg19_chr2_217316245_217316745_+ + 91 1.35e-04 CTGTCCTCTT AGATAAAA CC
hg19_chr5_149494951_149495451_+ + 69 1.35e-04 AGGGGACAGC TGATAAGG GCAGCCTGGC
hg19_chr20_62397044_62397544_+ - 74 1.35e-04 TCTTGGGGGT TGATAAGG AGGCCTGGTT
hg19_chr20_35806640_35807140_+ + 58 1.35e-04 TCTGCAAATC AGATAAAA CGTCACTCGT
hg19_chr3_169872409_169872909_+ + 48 1.35e-04 TTTCCACAAC TGATAAGG CTCTCCTTTT
hg19_chr1_174173239_174173739_+ - 45 1.35e-04 CTCTGTTTAC AGATAACA CGACTCTATA
hg19_chr19_4417615_4418115_+ - 33 1.35e-04 ATCTGGGATT AGATAACA AGAGAGACTA
hg19_chr10_126689318_126689818_+ - 9 1.35e-04 TGGTCCCATC TGATAAGG GCGCTTGG
hg19_chr8_103269259_103269759_+ + 24 1.35e-04 CCTAGTATGC AGATAACA ATCAAGATAA
hg19_chr13_46897972_46898472_+ + 46 1.35e-04 TGCCTGGCCT AGATAACA TACAGCTCTT
hg19_chr20_1156452_1156952_+ - 86 1.35e-04 GGGGATC AGATAACA CAAGCAGAGG
hg19_chr10_11541352_11541852_+ + 85 1.35e-04 GATAGCCAGG TGATAAGG AAGACAGG
hg19_chr2_198343069_198343569_+ + 75 1.35e-04 TGGTTATGTG AGATAACA GACATCTAGT
hg19_chr7_6096204_6096704_+ - 8 1.35e-04 TGTAACATTG TGATAAGG GTTTCTG
hg19_chr18_60117631_60118131_+ - 26 1.35e-04 TGTGTTTCAG AGATAACA GAGAGGGATG
hg19_chr18_45452597_45453097_+ - 33 1.35e-04 CAGAAAAAAC AGATAACA GCTCGGTGAG
hg19_chr11_76499245_76499745_+ - 8 1.35e-04 TGGTGTCTGC TGATAAGG ACAGCTC
hg19_chr5_86707718_86708218_+ + 2 1.35e-04 C TGATAAGG TTAGCTTCCC
hg19_chr2_55315009_55315509_+ - 69 1.35e-04 GCTGGGGAGA AGATAACA TAACCCGTAA
hg19_chr16_58522463_58522963_+ - 21 1.35e-04 TCTGTCTGGA AGATAACA CTGTACTCTT
hg19_chr7_12762283_12762783_+ - 14 1.35e-04 AGAGAGAATG AGATAAAA AGAGGCAGTA
hg19_chr7_99744084_99744584_+ + 6 1.35e-04 ACCAT AGATAAAA AAGATAGGAA
hg19_chr5_108763353_108763853_+ + 33 1.35e-04 GTTATAATCC AGATAAAA AATGATGTTT
hg19_chr2_242702132_242702632_+ - 63 1.35e-04 TAATTCCTAC AGATAAAA ATCTAACGAA
hg19_chr16_11438887_11439387_+ - 55 1.35e-04 GCGCATGCGT AGATAAAA GTAAATAAAC
hg19_chr7_112213730_112214230_+ - 55 1.35e-04 TGGAGGGGGC AGATAACA AAACACAGAC
hg19_chr17_31187044_31187544_+ + 50 1.35e-04 TTGTTGTGTG AGATAACA TGTTTCTTTT
hg19_chr12_76477278_76477778_+ - 29 1.35e-04 TGTTAGCTGA TGATAAGG AAGGGCCTCC
hg19_chr7_39849724_39850224_+ + 62 1.35e-04 CACATGGGCC AGATAACA CAGCACAGCT
hg19_chr12_89934278_89934778_+ - 17 1.92e-04 GGGAAGAGAG AGATAAGT CCCACCCTTC
hg19_chr4_153945108_153945608_+ - 53 1.92e-04 TGACAGCCTG AGATAACG CGGACCACAG
hg19_chr1_112211783_112212283_+ - 68 1.92e-04 GCAGGAAGAA AGATAAAG AAAACGGCAT
hg19_chr11_63334789_63335289_+ - 65 1.92e-04 ACACTCTGAA AGATAAGT CAGAGTGGGC
hg19_chr13_33070593_33071093_+ - 79 1.92e-04 TGGATGTGGT AGATAAGT ACCGGTTTTG
hg19_chr1_221885420_221885920_+ + 75 1.92e-04 ATGAAACAAG AGATAAAG AAGTATTTAT
hg19_chr3_24393295_24393795_+ - 62 1.92e-04 CTCAAAAGAG AGATAAAG GAAACTCAAG
hg19_chr20_30195079_30195579_+ + 4 1.92e-04 TGC AGATAAGT GTGGAACCTC
hg19_chrX_49870858_49871358_+ + 60 1.92e-04 CGTTTATGTT AGATAAAG AAAGGGAAGT
hg19_chr5_149425540_149426040_+ + 80 1.92e-04 AGATCACTGA AGATAAAG TGAGCTAATG
hg19_chr21_31600013_31600513_+ - 52 1.92e-04 AGCACACTGA AGATAAAG ATGAGTCACA
hg19_chr19_39034613_39035113_+ - 93 1.92e-04 AGATAAAG AAGCAAAACA
hg19_chr15_75335873_75336373_+ - 52 1.92e-04 TCATCAGCCC AGATAAGT ACAAGGACAC
hg19_chr8_141800910_141801410_+ - 83 1.92e-04 AAGTGTTAAC AGATAAAG GAAACTAAAT
hg19_chr13_98758204_98758704_+ - 23 1.92e-04 TGCAGGAGGC AGATAAAG GGGAGGGTCC
hg19_chr16_24186535_24187035_+ + 61 1.92e-04 GGTGGGAGTT AGATAAGT GAATCATAAA
hg19_chr5_149190392_149190892_+ + 23 1.92e-04 GGAAAAAGTC AGATAAAG CGCAAAATTG
hg19_chr18_29843350_29843850_+ + 48 1.92e-04 TGGGCCCATT AGATAACG TTTTGGAAAG
hg19_chr16_19193595_19194095_+ - 50 1.92e-04 GTCCATAGAA AGATAACG CAAGCCAGAA
hg19_chr5_173193280_173193780_+ - 57 1.92e-04 GCAGGCTGGG AGATAAAG CCCAAGCCAC
hg19_chr2_86686719_86687219_+ + 77 1.92e-04 TTCAGCCTGG AGATAAGT TTCTTAACTT
hg19_chr16_57729617_57730117_+ - 40 1.92e-04 AGGGAGCAGC AGATAAAG GCTGGCCCCA
hg19_chr5_179127336_179127836_+ - 69 1.92e-04 AGCCATTTGC AGATAAGT CAGAAAATTT
hg19_chr2_234595515_234596015_+ - 54 1.92e-04 TATTTAATCT AGATAACG CTGAGTTTTT
hg19_chr5_96038718_96039218_+ - 82 1.92e-04 CCAACCCTAG AGATAAAG GTGCCAAACC
hg19_chr9_101697356_101697856_+ - 23 2.09e-04 TGGCAAGAGC TGATAAGC ACCATCAAGA
hg19_chr3_72218657_72219157_+ - 67 2.09e-04 TGTTTCTACG TGATAAGC ATTCAGCTGA
hg19_chr17_53497581_53498081_+ + 2 2.09e-04 C TGATAAGC AATATATTCA
hg19_chr5_171380804_171381304_+ - 68 2.09e-04 AGAGTGTTAG TGATAAGC CTTTTGCTGG
hg19_chr4_1023168_1023668_+ + 43 2.09e-04 GTCCTGGTGG TGATAAGC TGCTTCCCTG
hg19_chr6_110673621_110674121_+ - 61 2.09e-04 CTGCCAGCAT TGATAAGC TTCTTTTAAA
hg19_chr2_45896066_45896566_+ - 52 2.09e-04 CACAGTCATA TGATAAGC AGTGATAAAG
hg19_chr10_3930337_3930837_+ - 26 2.09e-04 CCAGGCCCAA TGATAAGC ACAGCACAGA
hg19_chr18_48717442_48717942_+ + 13 2.09e-04 TGAGCAGATG TGATAAGC ATTACTTCCG
hg19_chr3_122146719_122147219_+ + 34 2.09e-04 AGCACAAGCC TGATAAGC CAAATCTTTC
hg19_chr5_171435751_171436251_+ - 91 2.09e-04 TT TGATAAGC ATTTGTTCAC
hg19_chr7_45040743_45041243_+ - 18 2.46e-04 ACATCTTTGT AGATAACC GCAAATTATA
hg19_chr15_98503343_98503843_+ + 53 2.46e-04 TGAGAGCCGG AGATAACC CTGTTCCGCC
hg19_chr17_7553734_7554234_+ - 45 2.46e-04 GTAGAGGGAA AGATAACC CCAGAGAAAC
hg19_chrY_23411406_23411906_+ - 42 2.46e-04 GTCACAAGAT AGATAACC ACTAGCTGTA
hg19_chr18_44670371_44670871_+ + 67 2.46e-04 AGGGAATAAA AGATAAAC TCAGAGCCCA
hg19_chr13_98085907_98086407_+ - 71 2.46e-04 GCCCGCGCGG AGATAAAC AAGCACCGCG
hg19_chr2_230604872_230605372_+ + 19 2.46e-04 CCATGAAATG AGATAACC ATCTTTAGAG
hg19_chr14_90849799_90850299_+ + 73 2.46e-04 CGCAGAAATG AGATAAAC GCCCCTGAGC
hg19_chr17_76125040_76125540_+ - 22 2.46e-04 CAGGAGTGGG AGATAACC AGGCTCCCCC
hg19_chr3_196326530_196327030_+ + 90 2.46e-04 GCTCTTGAAG AGATAAAC ATG
hg19_chr5_171711516_171712016_+ + 7 2.46e-04 AAGAAG AGATAAAC GCTGACCTTA
hg19_chr16_68758562_68759062_+ - 83 2.46e-04 TGGGACGGAG AGATAAAC CCTTCCCCAA
hg19_chr1_40358294_40358794_+ - 31 2.46e-04 TTTAAGGATA AGATAACC AGCTGGGAGA
hg19_chr1_230087566_230088066_+ + 67 2.46e-04 ACCACAAGTC AGATAAAC TTCTGTTCCT
hg19_chr2_39443915_39444415_+ + 78 2.46e-04 TGCAAAGAGA AGATAACC ATCAAAGAGA
hg19_chr6_33584762_33585262_+ + 37 2.89e-04 GCACACAGGG TGATAACA TTTATACAAA
hg19_chr12_71054708_71055208_+ - 47 2.89e-04 AAGATGGGGG TGATAAAA GGCATTCAGT
hg19_chr2_45977115_45977615_+ - 58 2.89e-04 CCTTTTGGGG TGATAAAA ATATTCTGGC
hg19_chr8_56926356_56926856_+ + 14 2.89e-04 CTTTGGCAAA TGATAAAA ATTATCTCTA
hg19_chrX_48554550_48555050_+ + 68 2.89e-04 TGACTGACGG TGATAACA GGGAGTATGA
hg19_chr2_112218402_112218902_+ + 37 2.89e-04 GCTTTCTGTC TGATAAAA GCCAGCAAAC
hg19_chr9_104256972_104257472_+ + 92 2.89e-04 AAATTATCAC TGATAACA T
hg19_chr16_20758188_20758688_+ + 84 2.89e-04 GGAAGGGCTT TGATAACA CTATCTGCA
hg19_chr6_139946369_139946869_+ + 85 2.89e-04 GTGAAGGTTA TGATAACA GACATCGG
hg19_chr14_65278317_65278817_+ + 22 2.89e-04 TCAAGAAGTC TGATAAAA TGCTTGTGTT
hg19_chr4_79586266_79586766_+ - 86 2.89e-04 TTCTAGC TGATAACA AGTAGTTATC
hg19_chr15_75492028_75492528_+ + 6 2.89e-04 AGTCC TGATAAAA ACATGTGGAG
hg19_chr15_73888357_73888857_+ - 72 2.89e-04 TGTGCTTCTC TGATAACA GCCCTCTACT
hg19_chr3_15829448_15829948_+ + 58 2.89e-04 TTGTTTGCAA TGATAAAA TGTAACAGCA
hg19_chr22_40725065_40725565_+ + 92 2.89e-04 GCAGACCCTG TGATAACA G
hg19_chr6_53174188_53174688_+ + 79 2.89e-04 TGGGATTAGG TGATAACA GATGTTGTGG
hg19_chr6_7899812_7900312_+ + 32 2.89e-04 TGCTCCTCTC TGATAAAA AGGAAACAAA
hg19_chr17_79613755_79614255_+ - 13 2.89e-04 TGGGGATAGC TGATAAAA CAGACAGCTA
hg19_chr11_69796727_69797227_+ + 46 3.46e-04 CTGACGCTGA TGATAACG GCCTGGATCC
hg19_chr8_74432812_74433312_+ - 51 3.46e-04 CAGGGTTGGT TGATAAAG CAGCTCAATG
hg19_chr6_6704576_6705076_+ - 38 3.46e-04 CTCGTGGATT TGATAAGT GCTCATTTAT
hg19_chr8_131511615_131512115_+ - 38 3.46e-04 GAGTTGGTGT TGATAAAG CATTTGGAAC
hg19_chr17_26373083_26373583_+ - 1 3.46e-04 TGTCCAATAC TGATAAGT
hg19_chr15_69455360_69455860_+ + 44 3.46e-04 AGGCATAGAC TGATAAGT CAACACATAT
hg19_chr16_22247675_22248175_+ + 16 3.46e-04 CTGTAACAGG TGATAAAG GCTTGGGTGA
hg19_chr22_40625117_40625617_+ + 47 3.46e-04 AAATTTCAAC TGATAAAG GGATCTCACT
hg19_chr19_33047056_33047556_+ + 42 3.46e-04 TTACTCATTC TGATAAAG AACTGGTCTT
hg19_chr9_119184782_119185282_+ - 18 3.46e-04 GCAGGCTTCG TGATAAAG TGTGCACTAC
hg19_chr5_60116462_60116962_+ + 86 3.46e-04 GTTTGTCTAC TGATAAGT CTGTCTT
hg19_chr5_14463602_14464102_+ - 31 3.46e-04 GGGAAGATGT TGATAAAG TTATCTGTTT
hg19_chrX_107331702_107332202_+ - 62 3.46e-04 GTGAGTACTT TGATAAAG TTGAGTTGAT
hg19_chr10_65596367_65596867_+ + 28 3.46e-04 GCGTTGCACT TGATAACG TCTCTTCTCA
hg19_chr7_47602658_47603158_+ + 30 4.12e-04 CTGGACGGTG AGATAAAT ACATAAGAAC
hg19_chr7_80211134_80211634_+ - 51 4.12e-04 CTTTTGTGCA AGATAAAT GTATTCAATG
hg19_chr2_178130510_178131010_+ + 16 4.12e-04 CAGGTGAAGT AGATAATA CTGGCAGTGG
hg19_chr5_126307119_126307619_+ - 69 4.12e-04 ATGGACACTA AGATAACT GTCTTTCCTT
hg19_chr5_66191887_66192387_+ + 13 4.12e-04 TGGATTTTAG AGATAATA CCACAGGCAT
hg19_chr13_80632698_80633198_+ - 52 4.12e-04 GTTCTACAAG AGATAAAT CAGCTGAGAC
hg19_chr2_217354795_217355295_+ - 36 4.12e-04 TTGCAAAATC AGATAACT GTTGATTGTC
hg19_chr12_15006844_15007344_+ - 85 4.12e-04 TCTTTACA AGATAATA GAAAAATTAG
hg19_chr16_11032625_11033125_+ - 45 4.12e-04 TGCGATCCCA AGATAAAT CCCTGTCTCC
hg19_chr6_20692663_20693163_+ - 54 4.12e-04 AAGCCTCAAA AGATAATA TTTTCCAGAA
hg19_chr3_141376362_141376862_+ - 25 4.12e-04 AGATATTGGG AGATAACT AGCACCCTGA
hg19_chr2_11433041_11433541_+ + 28 4.12e-04 TTTTATAAAG AGATAATA AAGTAAAGGA
hg19_chr21_30390716_30391216_+ - 5 4.12e-04 ATAATTTGGC AGATAAAT GACC
hg19_chr11_39389183_39389683_+ - 51 4.12e-04 ATAGGTAGAC AGATAAAT AATTGTAGCA
hg19_chr19_10589075_10589575_+ - 81 4.12e-04 TGTGCCTCCC AGATAATA AATACCAGAT
hg19_chr8_98789956_98790456_+ + 72 4.12e-04 TCCACAGGAA AGATAAAT CCTACTTGAG
hg19_chr10_98437180_98437680_+ - 29 4.12e-04 TGTTTGTTGG AGATAAAT GTTTACAGAA
hg19_chr17_40471884_40472384_+ + 65 4.50e-04 TGGCAGGGGC TGATAAAC AGATCTCCCA
hg19_chr1_206260529_206261029_+ - 20 4.50e-04 TTCCAGTGGG TGATAAAC CATCAAAAAG
hg19_chr4_97396390_97396890_+ + 69 4.50e-04 CACTAGCCTC TGATAACC ATACTTCCCA
hg19_chr4_153935689_153936189_+ - 72 4.50e-04 TGAGACTGAT TGATAAAC AGGAGGAAAG
hg19_chr11_46435941_46436441_+ - 44 4.50e-04 GCACCCCCAC TGATAACC ATGGGGGGTG
hg19_chr4_185391685_185392185_+ + 38 4.70e-04 CTGCAATGAC AGATAATG AAGAAGTTGA
hg19_chr21_44687558_44688058_+ - 20 4.70e-04 TGCTAATGAC AGATAATG ACAGACCACA
hg19_chr15_63510340_63510840_+ - 67 4.70e-04 CCTGCTCAGC AGATAATG ATGCTGACAG
hg19_chr1_151556774_151557274_+ + 52 4.70e-04 TTTGGGTTGC AGATAATG GAGCAGTCTG
hg19_chr10_116398437_116398937_+ + 13 4.70e-04 GCACAGGGGA AGATAATG TACCCAGACC
hg19_chr1_154973261_154973761_+ + 20 4.70e-04 TTCTCCAGTG AGATAATG TCTGGGGTGG
hg19_chr4_4534127_4534627_+ - 25 4.90e-04 GGTTTTGACT AGATAATC CATAAGGACC
hg19_chr14_95989475_95989975_+ - 32 4.90e-04 CTGCATATAC AGATAATC ACACAACTGG
hg19_chr12_32173777_32174277_+ - 46 4.90e-04 CTGGTTTACC AGATAATC AAGAAGTAAC
hg19_chr9_33494251_33494751_+ - 57 5.56e-04 TGTCTCCTTT TGATAAAT ATCCCAGCAG
hg19_chr4_10327671_10328171_+ + 72 5.56e-04 TGGTCTGTCT TGATAACT TTTGTGGGAT
hg19_chr15_52138640_52139140_+ + 8 5.56e-04 TGAGCAT TGATAAAT CTTTCCCTGT
hg19_chr10_101767886_101768386_+ - 46 5.56e-04 TGCAGTGCAC TGATAACT TTTGCAATAA
hg19_chr11_93799984_93800484_+ + 56 5.56e-04 TGCTAGGTCC TGATAACT GTTAAGATGA
hg19_chr1_16088019_16088519_+ - 74 5.56e-04 GACTGATGGA TGATAATA AAAACAATAA
hg19_chr1_32409715_32410215_+ + 74 5.56e-04 CCTCCCAGAG TGATAACT GGGTAGAAGG
hg19_chr5_88293526_88294026_+ + 19 5.56e-04 AGTGCACTAA TGATAAAT TTAAGATTTC
hg19_chr4_88930015_88930515_+ + 29 5.56e-04 AGATAGCAGC TGATAAAT GTGTCTGAGC
hg19_chr10_51575753_51576253_+ + 71 5.56e-04 GAAAAAAATG TGATAACT GTGTGTGGAA
hg19_chr17_17753376_17753876_+ - 10 5.56e-04 TGGCTGCATG TGATAACT GCTGGCCCC
hg19_chr7_50414595_50415095_+ + 68 5.56e-04 ACAGGGACAG TGATAAAT AAGACAGCAT
hg19_chr5_39119859_39120359_+ + 26 5.99e-04 AGCCCTTTCT AGATAATT ATGTAGCTTG
hg19_chr3_4545997_4546497_+ - 1 5.99e-04 CCCCATCATC AGATAATT
hg19_chr7_7694514_7695014_+ - 72 6.18e-04 AGGCATCATT TGATAATC TCAACTGCCA
hg19_chr15_34603635_34604135_+ - 24 6.18e-04 GCCTTTTTAG TGATAATC TGAGGCTGGT
hg19_chr9_71633535_71634035_+ - 61 6.41e-04 GTATGTTGCA TGATAATT ACTAGGCATT

Block Diagrams

The height of the motif "block" is proportional to -log(p-value), truncated at the height for a motif with a p-value of 1e-10.
Click on any row to highlight sequence in all motifs. Mouse over the center of the motif blocks to see more information.

Name Lowest p-value Motif Location
hg19_chr7_39849724_39850224_+ 1.35e-04
+
-
hg19_chr17_79613755_79614255_+ 2.89e-04
+
-
hg19_chr1_62190981_62191481_+ 3.72e-05
+
-
hg19_chr4_87837433_87837933_+ 3.72e-05
+
-
hg19_chr1_8064722_8065222_+ 7.44e-05
+
-
hg19_chr5_96038718_96039218_+ 1.92e-04
+
-
hg19_chr6_7899812_7900312_+ 2.89e-04
+
-
hg19_chr12_76477278_76477778_+ 1.35e-04
+
-
hg19_chr5_171435751_171436251_+ 2.09e-04
+
-
hg19_chr12_57933020_57933520_+ 3.72e-05
+
-
hg19_chr14_65900848_65901348_+ 5.45e-05
+
-
hg19_chr4_159066709_159067209_+ 1.99e-05
+
-
hg19_chr8_8635125_8635625_+ 3.72e-05
+
-
hg19_chr2_234595515_234596015_+ 1.92e-04
+
-
hg19_chr10_88439144_88439644_+ 3.72e-05
+
-
hg19_chr12_69006898_69007398_+ 1.99e-05
+
-
hg19_chr17_70897778_70898278_+ 3.72e-05
+
-
hg19_chr17_31187044_31187544_+ 1.35e-04
+
-
hg19_chr7_112213730_112214230_+ 1.35e-04
+
-
hg19_chr16_11438887_11439387_+ 1.35e-04
+
-
hg19_chr17_26366214_26366714_+ 1.99e-05
+
-
hg19_chr2_39443915_39444415_+ 2.46e-04
+
-
hg19_chr1_154973261_154973761_+ 4.70e-04
+
-
hg19_chr2_242702132_242702632_+ 1.35e-04
+
-
hg19_chr4_174799813_174800313_+ 1.99e-05
+
-
hg19_chr10_65596367_65596867_+ 3.46e-04
+
-
hg19_chr5_108763353_108763853_+ 1.35e-04
+
-
hg19_chr10_98437180_98437680_+ 4.12e-04
+
-
hg19_chr10_116398437_116398937_+ 4.70e-04
+
-
hg19_chr11_3505322_3505822_+ 1.99e-05
+
-
hg19_chr8_86878790_86879290_+ 3.72e-05
+
-
hg19_chr11_46435941_46436441_+ 4.50e-04
+
-
hg19_chr18_33441972_33442472_+ 1.99e-05
+
-
hg19_chr12_32173777_32174277_+ 4.90e-04
+
-
hg19_chr6_3348037_3348537_+ 1.99e-05
+
-
hg19_chr15_34603635_34604135_+ 6.18e-04
+
-
hg19_chr5_68387010_68387510_+ 7.44e-05
+
-
hg19_chr14_106591439_106591939_+ 3.72e-05
+
-
hg19_chr3_122146719_122147219_+ 2.09e-04
+
-
hg19_chrX_107331702_107332202_+ 3.46e-04
+
-
hg19_chr14_95989475_95989975_+ 4.90e-04
+
-
hg19_chr6_89600828_89601328_+ 1.99e-05
+
-
hg19_chr6_11931362_11931862_+ 3.72e-05
+
-
hg19_chr5_179127336_179127836_+ 1.92e-04
+
-
hg19_chr2_113638789_113639289_+ 3.72e-05
+
-
hg19_chr1_151556774_151557274_+ 4.70e-04
+
-
hg19_chr7_99744084_99744584_+ 1.35e-04
+
-
hg19_chr6_53174188_53174688_+ 2.89e-04
+
-
hg19_chrY_14611829_14612329_+ 1.99e-05
+
-
hg19_chr3_47436004_47436504_+ 5.45e-05
+
-
hg19_chr5_177634960_177635460_+ 3.72e-05
+
-
hg19_chr5_14463602_14464102_+ 3.46e-04
+
-
hg19_chr7_12762283_12762783_+ 1.35e-04
+
-
hg19_chr14_78111853_78112353_+ 7.44e-05
+
-
hg19_chr15_63510340_63510840_+ 4.70e-04
+
-
hg19_chr8_98789956_98790456_+ 4.12e-04
+
-
hg19_chr16_58522463_58522963_+ 1.35e-04
+
-
hg19_chr12_76945107_76945607_+ 7.44e-05
+
-
hg19_chr1_230087566_230088066_+ 2.46e-04
+
-
hg19_chr5_60116462_60116962_+ 3.46e-04
+
-
hg19_chr18_48717442_48717942_+ 2.09e-04
+
-
hg19_chr6_78083485_78083985_+ 3.72e-05
+
-
hg19_chr2_55315009_55315509_+ 1.35e-04
+
-
hg19_chr9_21333097_21333597_+ 5.45e-05
+
-
hg19_chr16_57729617_57730117_+ 1.92e-04
+
-
hg19_chr4_7083465_7083965_+ 3.72e-05
+
-
hg19_chr16_27257137_27257637_+ 1.99e-05
+
-
hg19_chr11_10765641_10766141_+ 7.44e-05
+
-
hg19_chr9_4922387_4922887_+ 5.45e-05
+
-
hg19_chr7_135145965_135146465_+ 3.72e-05
+
-
hg19_chr10_3930337_3930837_+ 2.09e-04
+
-
hg19_chr19_10589075_10589575_+ 4.12e-04
+
-
hg19_chr5_86707718_86708218_+ 1.35e-04
+
-
hg19_chr22_40725065_40725565_+ 2.89e-04
+
-
hg19_chr2_45896066_45896566_+ 2.09e-04
+
-
hg19_chr12_6454612_6455112_+ 3.72e-05
+
-
hg19_chr2_86686719_86687219_+ 1.92e-04
+
-
hg19_chr12_3299283_3299783_+ 3.72e-05
+
-
hg19_chr2_220037620_220038120_+ 1.99e-05
+
-
hg19_chr8_41872577_41873077_+ 3.72e-05
+
-
hg19_chr11_76499245_76499745_+ 1.35e-04
+
-
hg19_chr2_241505034_241505534_+ 5.45e-05
+
-
hg19_chr1_40358294_40358794_+ 2.46e-04
+
-
hg19_chrY_2728551_2729051_+ 5.45e-05
+
-
hg19_chr3_58038039_58038539_+ 1.99e-05
+
-
hg19_chr13_32997738_32998238_+ 7.44e-05
+
-
hg19_chr9_71633535_71634035_+ 6.41e-04
+
-
hg19_chr18_45452597_45453097_+ 1.35e-04
+
-
hg19_chr7_50414595_50415095_+ 5.56e-04
+
-
hg19_chr1_52130423_52130923_+ 7.44e-05
+
-
hg19_chr3_15829448_15829948_+ 2.89e-04
+
-
hg19_chr5_173193280_173193780_+ 1.92e-04
+
-
hg19_chr2_202310962_202311462_+ 3.72e-05
+
-
hg19_chr17_17753376_17753876_+ 5.56e-04
+
-
hg19_chr11_12199296_12199796_+ 7.44e-05
+
-
hg19_chr12_8763411_8763911_+ 1.99e-05
+
-
hg19_chr18_60117631_60118131_+ 1.35e-04
+
-
hg19_chr16_68758562_68759062_+ 2.46e-04
+
-
hg19_chr11_39389183_39389683_+ 4.12e-04
+
-
hg19_chr6_110673621_110674121_+ 2.09e-04
+
-
hg19_chr21_30390716_30391216_+ 4.12e-04
+
-
hg19_chr4_1023168_1023668_+ 2.09e-04
+
-
hg19_chr16_19193595_19194095_+ 1.92e-04
+
-
hg19_chr20_4062008_4062508_+ 7.44e-05
+
-
hg19_chr10_63603726_63604226_+ 1.99e-05
+
-
hg19_chr7_6096204_6096704_+ 1.35e-04
+
-
hg19_chr2_198343069_198343569_+ 1.35e-04
+
-
hg19_chr10_51575753_51576253_+ 5.56e-04
+
-
hg19_chr15_73888357_73888857_+ 2.89e-04
+
-
hg19_chr4_88930015_88930515_+ 5.56e-04
+
-
hg19_chr5_88293526_88294026_+ 5.56e-04
+
-
hg19_chr5_5882770_5883270_+ 7.44e-05
+
-
hg19_chr5_171380804_171381304_+ 2.09e-04
+
-
hg19_chr2_11433041_11433541_+ 4.12e-04
+
-
hg19_chr1_32409715_32410215_+ 5.56e-04
+
-
hg19_chr4_185726385_185726885_+ 5.45e-05
+
-
hg19_chr11_61734005_61734505_+ 5.45e-05
+
-
hg19_chr17_53497581_53498081_+ 2.09e-04
+
-
hg19_chr5_171711516_171712016_+ 2.46e-04
+
-
hg19_chr10_11541352_11541852_+ 1.35e-04
+
-
hg19_chr18_29843350_29843850_+ 1.92e-04
+
-
hg19_chr20_1156452_1156952_+ 1.35e-04
+
-
hg19_chr13_46897972_46898472_+ 1.35e-04
+
-
hg19_chr15_75492028_75492528_+ 2.89e-04
+
-
hg19_chr2_238389664_238390164_+ 3.72e-05
+
-
hg19_chr1_226942349_226942849_+ 3.72e-05
+
-
hg19_chr3_141376362_141376862_+ 4.12e-04
+
-
hg19_chr2_202304826_202305326_+ 5.45e-05
+
-
hg19_chr6_168673226_168673726_+ 7.44e-05
+
-
hg19_chr8_103269259_103269759_+ 1.35e-04
+
-
hg19_chr3_196326530_196327030_+ 2.46e-04
+
-
hg19_chr7_93574989_93575489_+ 3.72e-05
+
-
hg19_chr10_81658103_81658603_+ 3.72e-05
+
-
hg19_chr10_126689318_126689818_+ 1.35e-04
+
-
hg19_chr19_4417615_4418115_+ 1.35e-04
+
-
hg19_chr5_149190392_149190892_+ 1.92e-04
+
-
hg19_chr14_95846791_95847291_+ 7.44e-05
+
-
hg19_chr5_77930370_77930870_+ 7.44e-05
+
-
hg19_chr16_24186535_24187035_+ 1.92e-04
+
-
hg19_chr17_76125040_76125540_+ 2.46e-04
+
-
hg19_chr20_44480963_44481463_+ 1.99e-05
+
-
hg19_chr3_170900781_170901281_+ 7.44e-05
+
-
hg19_chr6_3251694_3252194_+ 1.99e-05
+
-
hg19_chr1_18860857_18861357_+ 1.99e-05
+
-
hg19_chr4_153935689_153936189_+ 4.50e-04
+
-
hg19_chr3_72218657_72219157_+ 2.09e-04
+
-
hg19_chr13_20780756_20781256_+ 3.72e-05
+
-
hg19_chr4_97396390_97396890_+ 4.50e-04
+
-
hg19_chr5_143208163_143208663_+ 1.99e-05
+
-
hg19_chr1_174173239_174173739_+ 1.35e-04
+
-
hg19_chr3_169872409_169872909_+ 1.35e-04
+
-
hg19_chr14_90849799_90850299_+ 2.46e-04
+
-
hg19_chr4_154059399_154059899_+ 5.45e-05
+
-
hg19_chr17_75066546_75067046_+ 1.99e-05
+
-
hg19_chr6_20692663_20693163_+ 4.12e-04
+
-
hg19_chr2_68993550_68994050_+ 7.44e-05
+
-
hg19_chr14_103987799_103988299_+ 1.99e-05
+
-
hg19_chr16_11032625_11033125_+ 4.12e-04
+
-
hg19_chr13_98758204_98758704_+ 1.92e-04
+
-
hg19_chr8_141800910_141801410_+ 1.92e-04
+
-
hg19_chr15_75335873_75336373_+ 1.92e-04
+
-
hg19_chr17_25773805_25774305_+ 1.99e-05
+
-
hg19_chr12_15006844_15007344_+ 4.12e-04
+
-
hg19_chr5_145238407_145238907_+ 1.99e-05
+
-
hg19_chr3_186606190_186606690_+ 3.72e-05
+
-
hg19_chr4_79586266_79586766_+ 2.89e-04
+
-
hg19_chr20_35806640_35807140_+ 1.35e-04
+
-
hg19_chr2_230604872_230605372_+ 2.46e-04
+
-
hg19_chr20_62397044_62397544_+ 1.35e-04
+
-
hg19_chr7_38947354_38947854_+ 1.99e-05
+
-
hg19_chr1_16088019_16088519_+ 5.56e-04
+
-
hg19_chr2_217354795_217355295_+ 4.12e-04
+
-
hg19_chr5_149494951_149495451_+ 1.35e-04
+
-
hg19_chr19_39034613_39035113_+ 1.92e-04
+
-
hg19_chr9_119184782_119185282_+ 3.46e-04
+
-
hg19_chr2_217316245_217316745_+ 1.35e-04
+
-
hg19_chr21_31600013_31600513_+ 1.92e-04
+
-
hg19_chr16_27442387_27442887_+ 1.35e-04
+
-
hg19_chr20_31363992_31364492_+ 1.35e-04
+
-
hg19_chr11_93799984_93800484_+ 5.56e-04
+
-
hg19_chr5_149425540_149426040_+ 1.92e-04
+
-
hg19_chr15_63837585_63838085_+ 3.72e-05
+
-
hg19_chr13_98085907_98086407_+ 2.46e-04
+
-
hg19_chrX_49870858_49871358_+ 1.92e-04
+
-
hg19_chr2_30414619_30415119_+ 1.35e-04
+
-
hg19_chr20_30195079_30195579_+ 1.92e-04
+
-
hg19_chr1_153405797_153406297_+ 7.44e-05
+
-
hg19_chr6_43937191_43937691_+ 3.72e-05
+
-
hg19_chr6_5466913_5467413_+ 7.44e-05
+
-
hg19_chr6_80865863_80866363_+ 1.35e-04
+
-
hg19_chr7_37428580_37429080_+ 1.35e-04
+
-
hg19_chr2_242071894_242072394_+ 1.35e-04
+
-
hg19_chr13_32612391_32612891_+ 1.99e-05
+
-
hg19_chr6_116789373_116789873_+ 7.44e-05
+
-
hg19_chr10_9867249_9867749_+ 3.72e-05
+
-
hg19_chr19_52011233_52011733_+ 1.35e-04
+
-
hg19_chr14_65278317_65278817_+ 2.89e-04
+
-
hg19_chr2_112793300_112793800_+ 7.44e-05
+
-
hg19_chr3_24393295_24393795_+ 1.92e-04
+
-
hg19_chr19_33047056_33047556_+ 3.46e-04
+
-
hg19_chr6_139946369_139946869_+ 2.89e-04
+
-
hg19_chr16_20758188_20758688_+ 2.89e-04
+
-
hg19_chr18_33071458_33071958_+ 1.35e-04
+
-
hg19_chr6_7468659_7469159_+ 1.35e-04
+
-
hg19_chrX_38663224_38663724_+ 1.35e-04
+
-
hg19_chr9_104256972_104257472_+ 2.89e-04
+
-
hg19_chr10_101767886_101768386_+ 5.56e-04
+
-
hg19_chr5_72249377_72249877_+ 5.45e-05
+
-
hg19_chr16_58893788_58894288_+ 7.44e-05
+
-
hg19_chr20_60561810_60562310_+ 7.44e-05
+
-
hg19_chr12_66734874_66735374_+ 5.45e-05
+
-
hg19_chr15_52138640_52139140_+ 5.56e-04
+
-
hg19_chr7_111172036_111172536_+ 3.72e-05
+
-
hg19_chr3_4545997_4546497_+ 5.99e-04
+
-
hg19_chr9_101697356_101697856_+ 2.09e-04
+
-
hg19_chr10_11377035_11377535_+ 1.99e-05
+
-
hg19_chr6_99423174_99423674_+ 1.99e-05
+
-
hg19_chr8_67017874_67018374_+ 3.72e-05
+
-
hg19_chr1_224348000_224348500_+ 5.45e-05
+
-
hg19_chr18_44670371_44670871_+ 2.46e-04
+
-
hg19_chr12_57770860_57771360_+ 1.35e-04
+
-
hg19_chr2_112218402_112218902_+ 2.89e-04
+
-
hg19_chr6_14932652_14933152_+ 1.35e-04
+
-
hg19_chr1_206260529_206261029_+ 4.50e-04
+
-
hg19_chr1_221885420_221885920_+ 1.92e-04
+
-
hg19_chr3_98322450_98322950_+ 1.99e-05
+
-
hg19_chr3_158461315_158461815_+ 1.35e-04
+
-
hg19_chrY_23411406_23411906_+ 2.46e-04
+
-
hg19_chr17_34896478_34896978_+ 1.35e-04
+
-
hg19_chr13_33070593_33071093_+ 1.92e-04
+
-
hg19_chr2_47758666_47759166_+ 7.44e-05
+
-
hg19_chr11_65403555_65404055_+ 1.99e-05
+
-
hg19_chrX_48554550_48555050_+ 2.89e-04
+
-
hg19_chr18_42639662_42640162_+ 1.35e-04
+
-
hg19_chrX_56306233_56306733_+ 5.45e-05
+
-
hg19_chr7_7694514_7695014_+ 6.18e-04
+
-
hg19_chr13_80632698_80633198_+ 4.12e-04
+
-
hg19_chr10_103348633_103349133_+ 1.35e-04
+
-
hg19_chr5_66191887_66192387_+ 4.12e-04
+
-
hg19_chr3_155546258_155546758_+ 1.99e-05
+
-
hg19_chr6_125404280_125404780_+ 1.99e-05
+
-
hg19_chr2_217942564_217943064_+ 1.35e-04
+
-
hg19_chr22_40625117_40625617_+ 3.46e-04
+
-
hg19_chrX_100615381_100615881_+ 1.35e-04
+
-
hg19_chr2_202047549_202048049_+ 5.45e-05
+
-
hg19_chr17_40471884_40472384_+ 4.50e-04
+
-
hg19_chr7_36967919_36968419_+ 1.35e-04
+
-
hg19_chr9_32884474_32884974_+ 3.72e-05
+
-
hg19_chr16_22247675_22248175_+ 3.46e-04
+
-
hg19_chr8_56926356_56926856_+ 2.89e-04
+
-
hg19_chr15_66097379_66097879_+ 5.45e-05
+
-
hg19_chr1_156832808_156833308_+ 3.72e-05
+
-
hg19_chr3_152048151_152048651_+ 3.72e-05
+
-
hg19_chr5_126307119_126307619_+ 4.12e-04
+
-
hg19_chr11_63334789_63335289_+ 1.92e-04
+
-
hg19_chr5_177984370_177984870_+ 3.72e-05
+
-
hg19_chr6_118035324_118035824_+ 1.35e-04
+
-
hg19_chr17_7553734_7554234_+ 2.46e-04
+
-
hg19_chr6_111260575_111261075_+ 1.35e-04
+
-
hg19_chr1_112211783_112212283_+ 1.92e-04
+
-
hg19_chr20_33707927_33708427_+ 1.35e-04
+
-
hg19_chr17_1694368_1694868_+ 5.45e-05
+
-
hg19_chr4_10327671_10328171_+ 5.56e-04
+
-
hg19_chr4_4534127_4534627_+ 4.90e-04
+
-
hg19_chr21_44687558_44688058_+ 4.70e-04
+
-
hg19_chr15_69455360_69455860_+ 3.46e-04
+
-
hg19_chr2_45977115_45977615_+ 2.89e-04
+
-
hg19_chr17_26373083_26373583_+ 3.46e-04
+
-
hg19_chr1_26180840_26181340_+ 1.99e-05
+
-
hg19_chr12_71054708_71055208_+ 2.89e-04
+
-
hg19_chr16_72587264_72587764_+ 1.35e-04
+
-
hg19_chr5_126362866_126363366_+ 3.72e-05
+
-
hg19_chr4_185391685_185392185_+ 4.70e-04
+
-
hg19_chr21_43854056_43854556_+ 7.44e-05
+
-
hg19_chr2_180652221_180652721_+ 7.44e-05
+
-
hg19_chr4_153945108_153945608_+ 1.92e-04
+
-
hg19_chr8_131511615_131512115_+ 3.46e-04
+
-
hg19_chr6_6704576_6705076_+ 3.46e-04
+
-
hg19_chr16_57664343_57664843_+ 5.45e-05
+
-
hg19_chr8_74432812_74433312_+ 3.46e-04
+
-
hg19_chr12_8849463_8849963_+ 1.35e-04
+
-
hg19_chr22_38569297_38569797_+ 3.72e-05
+
-
hg19_chr9_33494251_33494751_+ 5.56e-04
+
-
hg19_chr2_178130510_178131010_+ 4.12e-04
+
-
hg19_chr7_80211134_80211634_+ 4.12e-04
+
-
hg19_chr8_125576737_125577237_+ 1.99e-05
+
-
hg19_chr5_39119859_39120359_+ 5.99e-04
+
-
hg19_chr15_98503343_98503843_+ 2.46e-04
+
-
hg19_chr9_100536064_100536564_+ 3.72e-05
+
-
hg19_chr7_47602658_47603158_+ 4.12e-04
+
-
hg19_chr12_89934278_89934778_+ 1.92e-04
+
-
hg19_chr3_4547521_4548021_+ 5.45e-05
+
-
hg19_chr6_37464514_37465014_+ 1.35e-04
+
-
hg19_chr3_183067208_183067708_+ 1.35e-04
+
-
hg19_chr8_96240989_96241489_+ 3.72e-05
+
-
hg19_chr14_89921739_89922239_+ 1.99e-05
+
-
hg19_chr6_37282534_37283034_+ 7.44e-05
+
-
hg19_chr15_83668799_83669299_+ 7.44e-05
+
-
hg19_chr7_129360132_129360632_+ 1.35e-04
+
-
hg19_chr6_33584762_33585262_+ 2.89e-04
+
-
hg19_chr7_45040743_45041243_+ 2.46e-04
+
-
hg19_chr14_20950455_20950955_+ 1.99e-05
+
-
hg19_chr5_158637855_158638355_+ 3.72e-05
+
-
hg19_chr13_51185524_51186024_+ 5.45e-05
+
-
hg19_chrX_109652326_109652826_+ 1.99e-05
+
-
hg19_chr11_69796727_69797227_+ 3.46e-04
+
-
hg19_chr8_126347720_126348220_+ 5.45e-05
+
-
 
0
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100

Time 351.4 secs.

Motif 2

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Summary

Sequence Logo

E-value 1.7e-015
Width 29
Sites 74
show more
PNG LOGOS require CONVERT from ImageMagick; see MEME installation guide

Download LOGO
   Orientation:    SSC:    Format:    Width: cm    Height: cm   

Regular expression

[GC][GC]G[CA][GAC][GA][CG][GC]GG[GC][AC]G[GA][GCA][GT][GC][CG][GC][CAG][GT]G[CG][CG][GA][GC][CG][GC][GC]

Further Analysis

Submit this motif to  
      
      
      
      
 Mouse-over buttons for more information.

Data Formats

View the motif in PSPM Format 
     PSSM Format 
     BLOCKS Format 
     FASTA Format 
     Raw Format 
     or Hide

Sites

Click on any row to highlight sequence in all motifs.

Name Strand Start p-value Sites
hg19_chr8_145742992_145743492_+ + 65 3.91e-12 CAATGCGGAT GCGCGGCGGGCCGGGGGCGGGGCCACCGC CCCTGGG
hg19_chr5_177557669_177558169_+ + 22 2.41e-09 CACTCGGCAT GCGCGGCGGGGAGCCTCGGCGGTGAGGCG CAAAGCCGCG
hg19_chr4_164087831_164088331_+ + 63 2.84e-09 GACGTATGTG GCGCGACGGCGCGACGGCGCTCGCGGGGG CAGGATACA
hg19_chr7_72936462_72936962_+ - 52 7.40e-09 TACGCGACAG GGGCAGGGGGGCGGGACCCAGGCGCGGAG CGGCAGCTCC
hg19_chr7_6120790_6121290_+ - 37 8.63e-09 GGCCCGCGAG CGCAAAGTGGAAGGCGGCGGGGCCGGGGC TGTGGCTGCG
hg19_chr11_74413536_74414036_+ + 43 1.36e-08 TGTGGGGTCT GGGGCACGGGAAGGGGGACTGGCCAGAGG TACACCCCAC
hg19_chr3_101443558_101444058_+ - 37 1.58e-08 AGCATCGGGA GCGCGGGAGCCAGGGCGCCGGGCCGCGCG AAGGCTTCTG
hg19_chr10_22517950_22518450_+ - 5 3.24e-08 CGCCAGGGTG CTGGAGCGGGGACGCGCAGAGGCCGCGCG GGCC
hg19_chr3_156534601_156535101_+ + 34 3.73e-08 GGGGCGGGGC CGGCGGGCTGCAGGCACGCAGGCGGCGCG GCGGCCTGGG
hg19_chrX_38663224_38663724_+ + 21 6.46e-08 GGTGCTGCCG GGGGAGGCGGGAGGAGGAGACACCAGGGG TGGCCCTGAG
hg19_chr2_232573676_232574176_+ + 5 6.46e-08 GGGC CGGCCGCGGGAAGTGGCGGCGAGCGCCCG CCGGCCGCGC
hg19_chr9_114937269_114937769_+ - 47 8.43e-08 GGAGGAGGCG CGGGCGCGCCGGGAGGGACCGGCGGCGGC ATGGGCCGGG
hg19_chr3_126194329_126194829_+ - 67 1.10e-07 CCCCA GCGCCGCTCGGCGCGAGCCCCGCGCGCCG CCGCCTGCTA
hg19_chr2_27294214_27294714_+ + 7 1.10e-07 CGGCCA CGGCCACGGCGGGGCTGGCCCGTGGGACG GCCCCTGCGT
hg19_chr11_46264732_46265232_+ + 51 1.10e-07 GCGGGGCGCC GGGAACCGGGCCGACGCGCATGCGCGGGC TGCGGCCCCG
hg19_chr2_200523746_200524246_+ - 57 1.61e-07 GCCTGGCTCG GCTCGGCTCTGCGGCGGCCGGGGCGCCGC GTTCCCCAAG
hg19_chr14_103987799_103988299_+ - 52 1.83e-07 CTTTTGTTTA CGTCGCCCGGGAGCGGCAGCCGCCGTCGC GCTCTTATCT
hg19_chr2_242448094_242448594_+ - 41 2.07e-07 GCAGGGCAGA GCCCAAGGGAGAGGGCCGCGCGGCCGCCG TAACGTCGGA
hg19_chr17_73584371_73584871_+ + 61 3.82e-07 AGCGAAACCC GCGAGGCCCAGGAGAGCGGCAGCCAGCGC GGCACAGCCC
hg19_chr1_202779639_202780139_+ - 17 3.82e-07 CGTCTGTTGT GGGCGGGGGAGCGGCTGCCTTCCCGGAGA GTCCTCTCGG
hg19_chr9_73033848_73034348_+ + 45 4.84e-07 AAAAAGTCTT CCGCAGGCGGCCGCCGCCGCAGCAGCCTG AGGAGGCGAG
hg19_chr8_26435143_26435643_+ - 70 4.84e-07 TC GGCCACCGTGGCGCATGCGCCGCCAGCCA CTCCCTTTCC
hg19_chr15_64679828_64680328_+ + 39 4.84e-07 GGGAAGATGG CGGTGGCTGGGGCGGTGTCCGGGGAGCCG CTGGTGCACT
hg19_chr4_153945108_153945608_+ - 14 6.86e-07 CGGACCACAG CCGCGGCTGGGAAGATCTGCGGGGACACG CTCCAGATGG
hg19_chr9_88555569_88556069_+ - 58 6.86e-07 CCGGAAAGAG GCGGAGCCCGGAGTCTCAGAGCCCGCCCC GTCTGCGCTG
hg19_chr19_13076191_13076691_+ - 21 6.86e-07 GCACCCAGGT GAGGAGCTTGGAGGCCGGGGGGCCGTGGG AAGAGACCAG
hg19_chr14_68286194_68286694_+ - 28 7.69e-07 TGTATCCAAT CAGAGGCCGGCAGAGGCCCAGGTTGGCTC CGCGGCTTGC
hg19_chr3_150803125_150803625_+ + 9 7.69e-07 GCCAGCCT CGGCGCCGGGGCCCGCGGGCTGCGCGCTC TGCGGCTGCG
hg19_chr7_140059102_140059602_+ + 2 9.63e-07 T GGGCAGAGGCACGGGGCGCATGCCAGCCA CTGTTATGGC
hg19_chr9_6645712_6646212_+ + 18 1.08e-06 TGGCTGGTGC CGGGGGCCGGGACGCTCCGTACGCCGCCC GCCAGGGTGT
hg19_chr2_171675086_171675586_+ + 65 1.08e-06 TCGGCTGTCA GGGACGCTAGGTGACTCCCAGGGCACCGG AAAGCGA
hg19_chr1_154973261_154973761_+ - 58 1.08e-06 CAGCCAGGGG CGGAAAGTGTGAGGCGCCCCTGAGGGCTC AGGCCAAACC
hg19_chr6_100016354_100016854_+ + 71 1.34e-06 ACAAAAGTTC CGGCCCGCGGTAGCGGAGGGAGCCGGAGG G
hg19_chr9_77567383_77567883_+ + 30 1.67e-06 GACTGAGCGC GTGAGAGAGGGACAGGCCGAAGTCGGGCG AGGAGGCGAC
hg19_chr5_145214711_145215211_+ + 62 1.85e-06 TGGCCACTCG GAGAAACGCGCAGTCGGCCACGCCCACGC CCCTACTGCC
hg19_chr3_121553786_121554286_+ + 7 2.54e-06 TGAGAC GCTCCGGTGGGGCGGTGCGCGTCGAGCGC GGGGTGGAGT
hg19_chr3_168867112_168867612_+ - 66 2.54e-06 GTAGCT CGGAAGGACGCGGAACGGCGGGCGAGGCG GAAGGCAGAG
hg19_chr20_4151589_4152089_+ + 52 2.82e-06 TCTTTCTTTC CCCAAGGCGAGAGAAGGACAGGGCAGGCA CCGAGTACCA
hg19_chr13_98085907_98086407_+ - 34 2.82e-06 ACAAGCACCG CGACCGCCGAGCAGCGCCGAACCCAGCGC GCCCAGTCAG
hg19_chr1_241682856_241683356_+ - 1 3.12e-06 AACGGTTTCT GACAACCGGCGTGGAGGCGTGGCCACAGC
hg19_chr2_38604106_38604606_+ - 11 4.23e-06 GCTGTGGCGC CGGCGACGGACCAGCGACCCAAGCGCCGC GGTTAACCAC
hg19_chr3_196326530_196327030_+ + 28 4.67e-06 GTTACTTTCT CCTCAAGGGGGAGGCAGACGTGTCGCAGA TAAACATCCA
hg19_chr9_36190449_36190949_+ - 68 6.26e-06 TGCG CGGGCCCCGGGAGGCGGAAGTGCTGCCTG ATAGGGAGCG
hg19_chr9_33076446_33076946_+ - 54 6.26e-06 TCTATCTCCA GAGCGGGAGCCAGACGCCGACCCAAGCGG AAGTGACGTT
hg19_chr10_22541837_22542337_+ + 1 7.58e-06 GGTCCTCGGGTAGAGGCGCAAGCGCGCCC CAAGACCATT
hg19_chr14_89921739_89922239_+ + 52 8.34e-06 TCTTATCTGA CAGCAGGGCGGGACCGGACCTGAGGGCTG AGTGGGTGTG
hg19_chr6_158589348_158589848_+ - 38 8.34e-06 ACCCACGATT AAACGAGGGGGGGACTGCCGTGCGGCCCC GCCAGGAAGG
hg19_chr7_102714871_102715371_+ + 33 9.16e-06 TCTAACTCCC CACCGACGGTCTGTGTCCGCTGCCACGCG TGTCCAGTAC
hg19_chr6_27760669_27761169_+ + 70 9.16e-06 GTGAGGGCGA CTAAGAGGCGGGGAAAGAGAGGCGAGCCG AT
hg19_chr2_54557392_54557892_+ + 57 1.01e-05 CGCACTTTTG CAGCCAGCTTGGGCGACCCGTGGCAGCGC TTTGACGACG
hg19_chr1_167189557_167190057_+ + 19 1.10e-05 CTGGTTCTGA GCTAGAGGGAGCGCATGCGCCGGCGACAC TTCTGGCGGC
hg19_chr14_54907996_54908496_+ - 13 1.21e-05 GTCAGTGCAA CGCAGACTCCGGCCATCAGAGGGCGCCGG GGCGGCTGGG
hg19_chr14_99450870_99451370_+ - 68 1.32e-05 GATT GGCTGGCGGGGTGGATCTGAAGCTGCGGC TGGGCCAGCC
hg19_chr12_47474370_47474870_+ - 64 1.32e-05 GCAAAAGA CGGGGAGGTGGCGGGGACAGAGACAGAGG AAATGAGAGA
hg19_chr17_7553734_7554234_+ - 65 1.45e-05 AGGGTGG GAGGAAGAGATAGAGGGCGTGTCCGGGCG GAGTAGAGGG
hg19_chrY_15591732_15592232_+ - 42 1.58e-05 CTAGGTCCTT GGCGAACTGGCTGGGCGGGGTCCCAGCAG CCTAGGAGTA
hg19_chr1_20987762_20988262_+ + 26 1.58e-05 GCAGCTTTGG CGATAAGGCGCGGAGAGCGCCGCCGGAAG TGCCCTGGTG
hg19_chr6_7468659_7469159_+ + 42 1.73e-05 CTTCTACAGA GGACGAGATGGGGAGGGCGTAGGGCGAGG AAGGAGGAGA
hg19_chr1_41157117_41157617_+ + 49 1.73e-05 AAGGGAAAAG GGGAAACGGTGCAAACGGCGTGGCCGCCA TCTTGCTTGT
hg19_chr2_48133790_48134290_+ - 54 2.25e-05 GTGAAGGTTG GGGTAGGGGGGAAGCTGAAACGGCGAACC GAAGGATTAA
hg19_chr16_30389145_30389645_+ - 52 2.45e-05 GCGGAAAAAG GCGGCGGGCGTAGATTGTGGGGCCGACCC CCGCAGGCCT
hg19_chr6_53213544_53214044_+ + 42 2.67e-05 CGTGGGCTGA CCGTGACGTCACAATGGCGCGGCCAGCCA ATCGGGACCC
hg19_chr7_2159776_2160276_+ + 72 2.67e-05 CTAGGACTGG CCGCCACACCCTGGAGAGCCTGGGGGCGC
hg19_chr22_39096891_39097391_+ + 16 2.91e-05 AGCCGCAGAC GCCGGGCGTGTAGGGGCGCAGTTCAACGG TTGGGGTGTT
hg19_chr15_91537577_91538077_+ - 31 4.39e-05 GATTTTCTTG GAGCGACGGGACGCGACGCCAATCGCGAC GAGGCTTCGC
hg19_chr3_69133978_69134478_+ - 47 4.76e-05 GCAAAGCGAT CGGAACCCGGGAAGAAATCGTCCCAGGCG CGGAGTGGGG
hg19_chr5_65439623_65440123_+ + 30 5.58e-05 GTTTCCCAAT CCGAGACCGGAAGGAACCGGGTAGACATG AGCACAAGAC
hg19_chr16_3333209_3333709_+ - 56 6.03e-05 CAGCGCGCAA GTTAGGCGTCCACAAGCCCACGGCGCCTG CTCGTGACCA
hg19_chr20_37075067_37075567_+ - 35 6.52e-05 CTAGTGCTCA GCGCCCGCGGAAATACGGCTGGGGGCGCG GCTGCAGCCT
hg19_chr19_58838562_58839062_+ + 10 1.48e-04 ACACTGAGT GCCGGACGGACCGACGGAGAATGTGTCGG ACTGACGGAG
hg19_chr11_70048994_70049494_+ + 66 1.58e-04 ACCTCCCACC CGGAAAAGAGACGATACGCCGGGCGCAGG CGCAGA
hg19_chr10_82137893_82138393_+ + 2 1.70e-04 G GACCAACCTCGACCATCCGCCCTCACCGC TAGGGAGCAG
hg19_chr11_33903352_33903852_+ + 47 1.82e-04 GGGTGTCCTT GATAGCGTGACGGGTGGGGCAGGCGGAAC TTTGGCATCA
hg19_chr7_152130648_152131148_+ + 66 1.95e-04 TTCAAAAGTA GGGTGTGTGCGAGTGTGCGCGTGCGTGTG AGTGTG

Block Diagrams

The height of the motif "block" is proportional to -log(p-value), truncated at the height for a motif with a p-value of 1e-10.
Click on any row to highlight sequence in all motifs. Mouse over the center of the motif blocks to see more information.

Name Lowest p-value Motif Location
hg19_chr19_58838562_58839062_+ 1.48e-04
+
-
hg19_chr5_177557669_177558169_+ 2.41e-09
+
-
hg19_chr15_64679828_64680328_+ 4.84e-07
+
-
hg19_chr5_145214711_145215211_+ 1.85e-06
+
-
hg19_chr1_154973261_154973761_+ 1.08e-06
+
-
hg19_chr7_6120790_6121290_+ 8.63e-09
+
-
hg19_chr9_114937269_114937769_+ 8.43e-08
+
-
hg19_chr16_30389145_30389645_+ 2.45e-05
+
-
hg19_chr15_91537577_91538077_+ 4.39e-05
+
-
hg19_chr10_22541837_22542337_+ 7.58e-06
+
-
hg19_chr2_171675086_171675586_+ 1.08e-06
+
-
hg19_chr7_72936462_72936962_+ 7.40e-09
+
-
hg19_chr2_54557392_54557892_+ 1.01e-05
+
-
hg19_chr19_13076191_13076691_+ 6.86e-07
+
-
hg19_chr22_39096891_39097391_+ 2.91e-05
+
-
hg19_chr1_20987762_20988262_+ 1.58e-05
+
-
hg19_chr16_3333209_3333709_+ 6.03e-05
+
-
hg19_chrY_15591732_15592232_+ 1.58e-05
+
-
hg19_chr2_232573676_232574176_+ 6.46e-08
+
-
hg19_chr1_167189557_167190057_+ 1.10e-05
+
-
hg19_chr8_145742992_145743492_+ 3.91e-12
+
-
hg19_chr2_38604106_38604606_+ 4.23e-06
+
-
hg19_chr9_88555569_88556069_+ 6.86e-07
+
-
hg19_chr7_140059102_140059602_+ 9.63e-07
+
-
hg19_chr1_241682856_241683356_+ 3.12e-06
+
-
hg19_chr10_82137893_82138393_+ 1.70e-04
+
-
hg19_chr1_41157117_41157617_+ 1.73e-05
+
-
hg19_chr3_150803125_150803625_+ 7.69e-07
+
-
hg19_chr1_202779639_202780139_+ 3.82e-07
+
-
hg19_chr11_46264732_46265232_+ 1.10e-07
+
-
hg19_chr2_200523746_200524246_+ 1.61e-07
+
-
hg19_chr9_33076446_33076946_+ 6.26e-06
+
-
hg19_chr3_196326530_196327030_+ 4.67e-06
+
-
hg19_chr6_158589348_158589848_+ 8.34e-06
+
-
hg19_chr4_164087831_164088331_+ 2.84e-09
+
-
hg19_chr2_27294214_27294714_+ 1.10e-07
+
-
hg19_chr11_74413536_74414036_+ 1.36e-08
+
-
hg19_chr14_103987799_103988299_+ 1.83e-07
+
-
hg19_chr3_168867112_168867612_+ 2.54e-06
+
-
hg19_chr9_36190449_36190949_+ 6.26e-06
+
-
hg19_chr6_100016354_100016854_+ 1.34e-06
+
-
hg19_chr5_65439623_65440123_+ 5.58e-05
+
-
hg19_chr12_47474370_47474870_+ 1.32e-05
+
-
hg19_chr20_37075067_37075567_+ 6.52e-05
+
-
hg19_chr2_242448094_242448594_+ 2.07e-07
+
-
hg19_chr13_98085907_98086407_+ 2.82e-06
+
-
hg19_chr14_99450870_99451370_+ 1.32e-05
+
-
hg19_chr11_70048994_70049494_+ 1.58e-04
+
-
hg19_chr6_7468659_7469159_+ 1.73e-05
+
-
hg19_chrX_38663224_38663724_+ 6.46e-08
+
-
hg19_chr3_156534601_156535101_+ 3.73e-08
+
-
hg19_chr7_2159776_2160276_+ 2.67e-05
+
-
hg19_chr10_22517950_22518450_+ 3.24e-08
+
-
hg19_chr14_54907996_54908496_+ 1.21e-05
+
-
hg19_chr3_121553786_121554286_+ 2.54e-06
+
-
hg19_chr17_73584371_73584871_+ 3.82e-07
+
-
hg19_chr9_6645712_6646212_+ 1.08e-06
+
-
hg19_chr9_77567383_77567883_+ 1.67e-06
+
-
hg19_chr20_4151589_4152089_+ 2.82e-06
+
-
hg19_chr3_101443558_101444058_+ 1.58e-08
+
-
hg19_chr17_7553734_7554234_+ 1.45e-05
+
-
hg19_chr11_33903352_33903852_+ 1.82e-04
+
-
hg19_chr8_26435143_26435643_+ 4.84e-07
+
-
hg19_chr4_153945108_153945608_+ 6.86e-07
+
-
hg19_chr3_126194329_126194829_+ 1.10e-07
+
-
hg19_chr6_27760669_27761169_+ 9.16e-06
+
-
hg19_chr3_69133978_69134478_+ 4.76e-05
+
-
hg19_chr7_152130648_152131148_+ 1.95e-04
+
-
hg19_chr7_102714871_102715371_+ 9.16e-06
+
-
hg19_chr6_53213544_53214044_+ 2.67e-05
+
-
hg19_chr14_89921739_89922239_+ 8.34e-06
+
-
hg19_chr14_68286194_68286694_+ 7.69e-07
+
-
hg19_chr2_48133790_48134290_+ 2.25e-05
+
-
hg19_chr9_73033848_73034348_+ 4.84e-07
+
-
 
0
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Time 655.9 secs.

Motif 3

Previous Top

Summary

Sequence Logo

E-value 7.1e-011
Width 8
Sites 45
show more
PNG LOGOS require CONVERT from ImageMagick; see MEME installation guide

Download LOGO
   Orientation:    SSC:    Format:    Width: cm    Height: cm   

Regular expression

CC[CA]C[AG]CCC

Further Analysis

Submit this motif to  
      
      
      
      
 Mouse-over buttons for more information.

Data Formats

View the motif in PSPM Format 
     PSSM Format 
     BLOCKS Format 
     FASTA Format 
     Raw Format 
     or Hide

Sites

Click on any row to highlight sequence in all motifs.

Name Strand Start p-value Sites
hg19_chr7_43803907_43804407_+ - 65 9.70e-06 CCACTCTCTT CCCCACCC CACTTTCCAG
hg19_chr2_69997227_69997727_+ - 39 9.70e-06 TGTGACTGGG CCCCACCC AAACACTAAA
hg19_chr17_73584371_73584871_+ - 20 9.70e-06 CTGCCTCCGT CCCCACCC GACGTGTCCC
hg19_chr1_206260529_206261029_+ + 81 9.70e-06 TCACCTCCTA CCCCACCC CGTAGCCCAT
hg19_chr1_224348000_224348500_+ + 9 9.70e-06 TGACCTTA CCCCACCC CAGCCGGATC
hg19_chr1_246163284_246163784_+ + 47 9.70e-06 GCTCCTTGTG CCCCACCC TCTTTCTTAC
hg19_chr9_71634670_71635170_+ + 57 9.70e-06 GCCCTTCCTG CCCCACCC AACTATCACC
hg19_chr1_89412535_89413035_+ + 93 9.70e-06 GCCCACTGAC CCCCACCC
hg19_chr15_69907869_69908369_+ + 55 9.70e-06 TGCCACTCCA CCCCACCC CCAACCCAAA
hg19_chr3_88059858_88060358_+ + 40 9.70e-06 AAGGAGGAGT CCCCACCC TGAGTAGAAC
hg19_chrX_70318046_70318546_+ + 36 9.70e-06 TTCAAGGCCC CCCCACCC CTCTCTGAGG
hg19_chr1_154973261_154973761_+ - 32 9.70e-06 CCAAACAGCC CCCCACCC CAGACATTAT
hg19_chr2_48133790_48134290_+ - 10 1.81e-05 CATCAGCAAC CCCCGCCC TTTCCTCCG
hg19_chr15_98503343_98503843_+ + 4 1.81e-05 AAA CCCCGCCC CCGTTCGTAA
hg19_chr9_77567383_77567883_+ - 87 1.81e-05 GAGCTG CCCCGCCC TACCCCCTCC
hg19_chr3_156534601_156535101_+ - 25 1.81e-05 AGCCCGCCGG CCCCGCCC CCGCTGCCTG
hg19_chr15_82339297_82339797_+ + 4 1.81e-05 CGG CCCCGCCC CGACGGGAGG
hg19_chr14_103987799_103988299_+ - 92 1.81e-05 T CCCCGCCC GCTTTTGTTT
hg19_chr17_76125040_76125540_+ - 46 1.81e-05 AAACAATGAA CCCCGCCC AGGTGTCAGG
hg19_chr11_46264732_46265232_+ + 85 1.81e-05 CGGGCTGCGG CCCCGCCC CAAAGGGC
hg19_chr3_5061060_5061560_+ + 88 1.81e-05 GGATCTCGGG CCCCGCCC AAGAA
hg19_chr15_91537577_91538077_+ + 69 1.81e-05 CCAAGAAAAT CCCCGCCC CTCGGGCTGA
hg19_chr11_3505322_3505822_+ - 8 1.81e-05 TATTTCCATG CCCCGCCC TCTTATC
hg19_chr11_71416400_71416900_+ - 93 1.81e-05 CCCCGCCC AAATCTCATG
hg19_chr10_88439144_88439644_+ + 26 1.81e-05 ATTGAGTGGG CCCCGCCC TGGGCTACAA
hg19_chr14_89921739_89922239_+ - 84 2.93e-05 GCTTTCCTT CCACACCC ACTCAGCCCT
hg19_chr9_6645712_6646212_+ - 51 2.93e-05 CAGTGCGGCT CCACACCC TGGCGGGCGG
hg19_chr3_45315154_45315654_+ - 52 2.93e-05 TACCAGGCCA CCACACCC ATCCCCCATC
hg19_chr1_145023956_145024456_+ + 63 2.93e-05 CCCGCATCAC CCACACCC ACTCTGAGCA
hg19_chr6_80865863_80866363_+ + 48 2.93e-05 TCCCTGCTTG CCACACCC AAAAGAACCT
hg19_chr7_73201561_73202061_+ + 65 2.93e-05 GTGGAGTTAG CCACACCC CCTAGCTATG
hg19_chr18_45452597_45453097_+ + 91 2.93e-05 CCAGCCCCCA CCACACCC CC
hg19_chr22_39096891_39097391_+ - 66 2.93e-05 GCCCGCAGCC CCACACCC ACGGCCTTTG
hg19_chr16_57729617_57730117_+ - 12 2.93e-05 ATTTCCAACT CCACACCC ACATGGGCCA
hg19_chr5_177634960_177635460_+ - 39 2.93e-05 ACAGAACCTG CCACACCC TGCCACTGCA
hg19_chr1_208137549_208138049_+ - 45 2.93e-05 GAAGACTCAG CCACACCC AGCCAGTGAA
hg19_chr11_46633467_46633967_+ - 62 2.93e-05 ACATACACCA CCACACCC AGCTAATCAC
hg19_chr19_58838562_58839062_+ - 74 2.93e-05 TTCGTCCGCC CCACACCC GGTCAATCAG
hg19_chr17_79613755_79614255_+ + 67 2.93e-05 ACTCTCCATG CCACACCC AGGACAGACG
hg19_chr8_96240989_96241489_+ - 40 3.90e-05 TCTGCAGGCC CCACGCCC CAAGGCCTCC
hg19_chr19_1204319_1204819_+ - 88 3.90e-05 AGGTC CCACGCCC CTTCAGAGAA
hg19_chr12_15006844_15007344_+ + 65 3.90e-05 CAGGCACGCA CCACGCCC AGCTAATTTT
hg19_chr13_20780756_20781256_+ - 22 3.90e-05 AGGTCAGGAG CCACGCCC ATTACACTGA
hg19_chr5_171711516_171712016_+ - 32 3.90e-05 TGAAAGAAAC CCACGCCC CCTGAACTAA
hg19_chr5_145214711_145215211_+ - 7 3.90e-05 AGGAAAAAGG CCACGCCC ATGTGG

Block Diagrams

The height of the motif "block" is proportional to -log(p-value), truncated at the height for a motif with a p-value of 1e-10.
Click on any row to highlight sequence in all motifs. Mouse over the center of the motif blocks to see more information.

Name Lowest p-value Motif Location
hg19_chr17_79613755_79614255_+ 2.93e-05
+
-
hg19_chr19_58838562_58839062_+ 2.93e-05
+
-
hg19_chr10_88439144_88439644_+ 1.81e-05
+
-
hg19_chr11_46633467_46633967_+ 2.93e-05
+
-
hg19_chr5_145214711_145215211_+ 3.90e-05
+
-
hg19_chr11_71416400_71416900_+ 1.81e-05
+
-
hg19_chr1_154973261_154973761_+ 9.70e-06
+
-
hg19_chr1_208137549_208138049_+ 2.93e-05
+
-
hg19_chrX_70318046_70318546_+ 9.70e-06
+
-
hg19_chr11_3505322_3505822_+ 1.81e-05
+
-
hg19_chr15_91537577_91538077_+ 1.81e-05
+
-
hg19_chr3_88059858_88060358_+ 9.70e-06
+
-
hg19_chr5_177634960_177635460_+ 2.93e-05
+
-
hg19_chr15_69907869_69908369_+ 9.70e-06
+
-
hg19_chr16_57729617_57730117_+ 2.93e-05
+
-
hg19_chr3_5061060_5061560_+ 1.81e-05
+
-
hg19_chr22_39096891_39097391_+ 2.93e-05
+
-
hg19_chr18_45452597_45453097_+ 2.93e-05
+
-
hg19_chr1_89412535_89413035_+ 9.70e-06
+
-
hg19_chr5_171711516_171712016_+ 3.90e-05
+
-
hg19_chr11_46264732_46265232_+ 1.81e-05
+
-
hg19_chr9_71634670_71635170_+ 9.70e-06
+
-
hg19_chr7_73201561_73202061_+ 2.93e-05
+
-
hg19_chr1_246163284_246163784_+ 9.70e-06
+
-
hg19_chr17_76125040_76125540_+ 1.81e-05
+
-
hg19_chr13_20780756_20781256_+ 3.90e-05
+
-
hg19_chr14_103987799_103988299_+ 1.81e-05
+
-
hg19_chr12_15006844_15007344_+ 3.90e-05
+
-
hg19_chr15_82339297_82339797_+ 1.81e-05
+
-
hg19_chr6_80865863_80866363_+ 2.93e-05
+
-
hg19_chr1_224348000_224348500_+ 9.70e-06
+
-
hg19_chr1_206260529_206261029_+ 9.70e-06
+
-
hg19_chr3_156534601_156535101_+ 1.81e-05
+
-
hg19_chr1_145023956_145024456_+ 2.93e-05
+
-
hg19_chr3_45315154_45315654_+ 2.93e-05
+
-
hg19_chr19_1204319_1204819_+ 3.90e-05
+
-
hg19_chr17_73584371_73584871_+ 9.70e-06
+
-
hg19_chr9_6645712_6646212_+ 2.93e-05
+
-
hg19_chr9_77567383_77567883_+ 1.81e-05
+
-
hg19_chr2_69997227_69997727_+ 9.70e-06
+
-
hg19_chr15_98503343_98503843_+ 1.81e-05
+
-
hg19_chr8_96240989_96241489_+ 3.90e-05
+
-
hg19_chr14_89921739_89922239_+ 2.93e-05
+
-
hg19_chr7_43803907_43804407_+ 9.70e-06
+
-
hg19_chr2_48133790_48134290_+ 1.81e-05
+
-
 
0
20
40
60
80
100

Time 947.2 secs.

All Motifs

Top

Combined Block Diagrams

Non-overlapping sites with a p-value better than 0.0001.
The height of the motif "block" is proportional to -log(p-value), truncated at the height for a motif with a p-value of 1e-10.
Click on any row to highlight sequence in all motifs. The motif blocks have tool tips with more information.

Motif 1
Motif 2
Motif 3
Name Combined p-value Motif Location
hg19_chr17_79613755_79614255_+ 5.72e-03
+
-
hg19_chr1_62190981_62191481_+ 9.60e-02
+
-
hg19_chr19_58838562_58839062_+ 5.86e-03
+
-
hg19_chr4_87837433_87837933_+ 4.29e-02
+
-
hg19_chr1_8064722_8065222_+ 4.74e-03
+
-
hg19_chr12_57933020_57933520_+ 3.07e-02
+
-
hg19_chr14_65900848_65901348_+ 2.51e-02
+
-
hg19_chr4_159066709_159067209_+ 8.21e-02
+
-
hg19_chr5_177557669_177558169_+ 4.96e-06
+
-
hg19_chr8_8635125_8635625_+ 2.95e-02
+
-
hg19_chr10_88439144_88439644_+ 2.97e-04
+
-
hg19_chr12_69006898_69007398_+ 1.92e-02
+
-
hg19_chr17_70897778_70898278_+ 1.18e-02
+
-
hg19_chr15_40885991_40886491_+ 1.09e-02
+
-
hg19_chr15_64679828_64680328_+ 3.41e-04
+
-
hg19_chr11_46633467_46633967_+ 2.48e-02
+
-
hg19_chr17_31187044_31187544_+ 1.03e-01
+
-
hg19_chr5_145214711_145215211_+ 1.10e-04
+
-
hg19_chr17_26366214_26366714_+ 3.74e-02
+
-
hg19_chr11_71416400_71416900_+ 5.12e-02
+
-
hg19_chr12_53101747_53102247_+ 2.40e-03
+
-
hg19_chr1_154973261_154973761_+ 4.04e-06
+
-
hg19_chr1_208137549_208138049_+ 1.87e-02
+
-
hg19_chr4_174799813_174800313_+ 1.22e-03
+
-
hg19_chr7_6120790_6121290_+ 1.53e-05
+
-
hg19_chrX_70318046_70318546_+ 5.87e-03
+
-
hg19_chr11_3505322_3505822_+ 8.50e-05
+
-
hg19_chr8_86878790_86879290_+ 2.63e-02
+
-
hg19_chr9_114937269_114937769_+ 4.35e-05
+
-
hg19_chr18_33441972_33442472_+ 4.54e-02
+
-
hg19_chr16_30389145_30389645_+ 1.94e-02
+
-
hg19_chr6_3348037_3348537_+ 2.80e-02
+
-
hg19_chr15_91537577_91538077_+ 1.20e-03
+
-
hg19_chr5_68387010_68387510_+ 1.58e-01
+
-
hg19_chr10_22541837_22542337_+ 1.29e-03
+
-
hg19_chr14_106591439_106591939_+ 6.70e-03
+
-
hg19_chr2_171675086_171675586_+ 7.79e-04
+
-
hg19_chr6_89600828_89601328_+ 4.35e-02
+
-
hg19_chr6_11931362_11931862_+ 5.54e-02
+
-
hg19_chr7_72936462_72936962_+ 1.34e-05
+
-
hg19_chr2_113638789_113639289_+ 1.03e-01
+
-
hg19_chr9_34647699_34648199_+ 1.97e-02
+
-
hg19_chr2_54557392_54557892_+ 2.06e-02
+
-
hg19_chrY_14611829_14612329_+ 4.19e-03
+
-
hg19_chr3_88059858_88060358_+ 2.82e-02
+
-
hg19_chr3_47436004_47436504_+ 3.35e-02
+
-
hg19_chr5_177634960_177635460_+ 6.16e-05
+
-
hg19_chr14_78111853_78112353_+ 1.24e-02
+
-
hg19_chr12_76945107_76945607_+ 1.41e-01
+
-
hg19_chr15_69907869_69908369_+ 8.40e-03
+
-
hg19_chr6_78083485_78083985_+ 5.24e-02
+
-
hg19_chr9_21333097_21333597_+ 1.63e-01
+
-
hg19_chr16_57729617_57730117_+ 1.02e-03
+
-
hg19_chr19_13076191_13076691_+ 3.64e-04
+
-
hg19_chr3_5061060_5061560_+ 9.73e-03
+
-
hg19_chr4_7083465_7083965_+ 4.92e-03
+
-
hg19_chr16_27257137_27257637_+ 3.10e-02
+
-
hg19_chr11_10765641_10766141_+ 1.64e-01
+
-
hg19_chr9_4922387_4922887_+ 1.34e-01
+
-
hg19_chr7_135145965_135146465_+ 5.56e-02
+
-
hg19_chr22_39096891_39097391_+ 1.54e-03
+
-
hg19_chr1_20987762_20988262_+ 3.47e-03
+
-
hg19_chr12_6454612_6455112_+ 3.95e-02
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-
hg19_chr12_3299283_3299783_+ 3.09e-03
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hg19_chr2_220037620_220038120_+ 3.18e-02
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hg19_chr8_41872577_41873077_+ 2.18e-02
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hg19_chr2_241505034_241505534_+ 1.20e-02
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hg19_chrY_2728551_2729051_+ 1.53e-01
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hg19_chr3_58038039_58038539_+ 8.16e-02
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hg19_chr13_32997738_32998238_+ 1.59e-01
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hg19_chr18_45452597_45453097_+ 4.28e-04
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hg19_chr1_52130423_52130923_+ 1.97e-01
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hg19_chr16_3333209_3333709_+ 6.35e-02
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hg19_chr11_12199296_12199796_+ 1.85e-01
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hg19_chr12_8763411_8763911_+ 1.38e-02
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hg19_chrY_15591732_15592232_+ 6.22e-04
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hg19_chr2_232573676_232574176_+ 2.70e-04
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hg19_chr1_167189557_167190057_+ 3.06e-02
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hg19_chr2_38604106_38604606_+ 1.46e-03
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hg19_chr4_1023168_1023668_+ 4.12e-03
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hg19_chr9_88555569_88556069_+ 6.65e-04
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hg19_chr7_140059102_140059602_+ 2.20e-03
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hg19_chr20_4062008_4062508_+ 1.02e-01
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hg19_chr1_241682856_241683356_+ 2.82e-04
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hg19_chr10_63603726_63604226_+ 7.80e-02
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hg19_chr1_89412535_89413035_+ 1.89e-02
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hg19_chr1_41157117_41157617_+ 1.58e-03
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hg19_chr5_5882770_5883270_+ 4.97e-04
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hg19_chr3_150803125_150803625_+ 2.24e-03
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hg19_chr4_185726385_185726885_+ 7.16e-02
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hg19_chr5_171711516_171712016_+ 1.23e-03
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hg19_chr2_238389664_238390164_+ 7.16e-03
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hg19_chr1_226942349_226942849_+ 1.14e-01
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hg19_chr11_46264732_46265232_+ 8.05e-06
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hg19_chr2_200523746_200524246_+ 1.69e-04
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hg19_chr2_202304826_202305326_+ 1.47e-02
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hg19_chr6_168673226_168673726_+ 4.95e-02
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hg19_chr7_73201561_73202061_+ 2.00e-02
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hg19_chr3_196326530_196327030_+ 4.23e-04
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hg19_chr8_126347720_126348220_+ 1.11e-01
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Motif 1
Motif 2
Motif 3
Top
MEME version
4.9.1 (Release date: Fri Aug 23 16:49:42 2013 +1000)
Reference
Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994.
show training set...
Command line summary

Letter frequencies in dataset
A: 0.261   C: 0.239   G: 0.239   T: 0.261

Background letter frequencies (from ./background):
A: 0.268   C: 0.232   G: 0.232   T: 0.268

Stopping Reason
Stopped because nmotifs = 3 reached. Program ran on b10a17.
show model parameters...

Explanation of MEME Results

Top

The MEME results consist of

  • The overview of all discovered motifs.
  • Information on each of the motifs MEME discovered, including:
    1. A summary table showing the width, number of contributing sites, log likelihood ratio, statistical significance, information content and relative entropy of the motif.
    2. A sequence LOGO.
    3. Downloadable LOGO files suitable for publication.
    4. A regular expression describing the motif.
    5. Some further analysis that can be performed on the motif.
    6. A list of data formats describing the motif.
    7. The contributing sites of the motif sorted by p-value and aligned with each other.
    8. The block diagrams of the contributing sites of the motif within each sequence in the training set.
  • A combined block diagram showing an optimized (non-overlapping) tiling of all of the motifs onto each of the sequences in the training set.
  • The version of MEME and the date it was released.
  • The reference to cite if you use MEME in your research.
  • A description of the sequences you submitted (the "training set") showing the name, "weight" and length of each sequence.
  • The command line summary detailing the parameters with which you ran MEME.
  • The reason why MEME stopped and the name of the CPU on which it ran.
  • This explanation of how to interpret MEME results.

Motifs

For each motif that it discovers in the training set, MEME prints the following information:

Summary Table

This summary table gives the main attributes of the motif.

E-value
The statistical significance of the motif. MEME usually finds the most statistically significant (low E-value) motifs first. The E-value of a motif is based on its log likelihood ratio, width, sites, the background letter frequencies (given in the command line summary), and the size of the training set. The E-value is an estimate of the expected number of motifs with the given log likelihood ratio (or higher), and with the same width and site count, that one would find in a similarly sized set of random sequences. (In random sequences each position is independent with letters chosen according to the background letter frequencies.)
Width
The width of the motif. Each motif describes a pattern of a fixed with as no gaps are allowed in MEME motifs.
Sites
The number of sites contributing to the construction of the motif.
Log Likelihood Ratio
The log likelihood ratio of the motif.The log likelihood ratio is the logarithm of the ratio of the probability of the occurrences of the motif given the motif model (likelihood given the motif) versus their probability given the background model (likelihood given the null model). (Normally the background model is a 0-order Markov model using the background letter frequencies, but higher order Markov models may be specified via the -bfile option to MEME.)
Information Content
The information content of the motif in bits. It is equal to the sum of the uncorrected information content, R(), in the columns of the LOGO. This is equal relative entropy of the motif relative to a uniform background frequency model.
Relative Entropy
The relative entropy of the motif, computed in bits and relative to the background letter frequencies given in the command line summary. It is equal to the log-likelihood ratio (llr) divided by the number of contributing sites of the motif times 1/ln(2),

re = llr / (sites * ln(2)).
Sequence LOGO

MEME motifs are represented by position-specific probability matrices that specify the probability of each possible letter appearing at each possible position in an occurrence of the motif. These are displayed as "sequence LOGOS", containing stacks of letters at each position in the motif. The total height of the stack is the "information content" of that position in the motif in bits. The height of the individual letters in a stack is the probability of the letter at that position multiplied by the total information content of the stack.

Note: The MEME LOGO differs from those produced by the Weblogo program because a small-sample correction is NOT applied. However, MEME LOGOs in PNG and encapsulated postscript (EPS) formats with small-sample correction (SSC) are available by clicking on the download button with "SSC" set to "on" under Download LOGO. The MEME LOGOs without small sample correction are similarly available. Error bars are included in the LOGOs with small-sample correction.

Modern web browsers supporting the canvas element and it's text manipulation functions as described in the html 5 standard, can render the sequence LOGOs without needing the images. The browsers which work with this feature are:

  • Firefox 3.5 and above
  • Safari 4 and above
  • Google Chrome 4 and above

Unfortunately Internet Explorer 8 does not support any html 5 features.

The information content of each motif position is computed as described in the paper by Schneider and Stephens, "Sequence Logos: A New Way to Display Consensus Sequences" but the small-sample correction, e(n), is set to zero for the LOGO displayed in the MEME output. The corrected information content of position i is given by

            R(i) for amino acids   = log2(20) - (H(i) + e(n))   (1a) 
            R(i) for nucleic acids =    2    - (H(i) + e(n))    (1b)
          

where H(i) is the entropy of position i,

            H(l) = - (Sum f(a,i) * log2[ f(a,i) ]).             (2)
          

Here, f(a,i) is the frequency of base or amino acid a at position i, and e(n) is the small-sample correction for an alignment of n letters. The height of letter a in column i is given by

            height = f(a,i) * R(i)                              (3)
          

The approximation for the small-sample correction, e(n), is given by:

            e(n) = (s-1) / (2 * ln(2) * n),                     (4)
          

where s is 4 for nucleotides, 20 for amino acids, and n is the number of sequences in the alignment.

The letters in the logos are colored as follows.
For DNA sequences, the letter categories contain one letter each.

NUCLEIC ACIDS COLOR
A RED
C BLUE
G ORANGE
T GREEN

For proteins, the categories are based on the biochemical properties of the various amino acids.

AMINO ACIDS COLOR PROPERTIES
A, C, F, I, L, V, W and M BLUE Most hydrophobic[Kyte and Doolittle, 1982]
NQST GREEN Polar, non-charged, non-aliphatic residues
DE MAGENTA Acidic
KR RED Positively charged
H PINK  
G ORANGE  
P YELLOW  
Y TURQUOISE  

J. Kyte and R. Doolittle, 1982. "A Simple Method for Displaying the Hydropathic Character of a Protein", J. Mol Biol. 157, 105-132.

Note: the "text" output format of MEME preserves the historical MEME format where LOGOS are replaced by a simplified probability matrix, a relative entropy plot, and a multi-level consensus sequence.

Download LOGO

Logos can be generated on the fly by the meme webservice and you may specify a number of options to customize them to your needs. The options are:

Orientation
Only valid for nucleotide motifs. Generate the standard view or the reverse complemented view of the motif.
SSC
Use small sample correction and show errorbars on the image. Small sample correction is used by the Weblogo program.
Format
The format of the generated image. If the image is to be used on the web then png is recommend. If the image is to be published then eps is recommended.
Width
The width of the generated image in centimetres.
Height
The height of the generated image in centimetres.

Regular Expression

This is a regular expression (RE) describing the motif. In each column, all letters with observed frequencies greater than 0.2 are shown; less-frequent letters are not included in the RE. MEME regular expressions are interpreted as follows: single letters match that letter; groups of letters in square brackets match any of the letters in the group. Regular expressions can be used for searching for the motif in sequences (using, for example, PatMatch) but the search accuracy will usually be better with the PSSM (using, for example MAST.)

Further Analysis

Either as a group or individually the motifs have a number of options for further analysis.

MAST
Finds the best matching positions for a set of motifs in each sequence provided to it, ranked by the combined score of each sequence. For more information about MAST please read the introduction.
FIMO
Finds all matches for a motif. For more information about FIMO please read the introduction.
TOMTOM
Compares a single motif to a database of motifs. For more information about TOMTOM please read the introduction.
GOMO
Identifies possible roles of DNA binding motifs. For more information about GOMO please read the introduction.
BLOCKS
Submit to Blocks Multiple Alignment Processor where you can do several things like create phylogeny trees and search the blocks against a database of other blocks (protein only). For more information about BLOCKS Multiple Alignment Processor please visit the website.
Data Formats

The extracted data is avaliable in the following formats.

PSPM Format
The motif itself is a position-specific probability matrix giving, for each position in the pattern, the observed frequency ("probability") of each possible letter. The probability matrix is printed "sideways"--columns correspond to the letters in the alphabet (in the same order as shown in the simplified motif) and rows corresponding to the positions of the motif, position one first. The motif is preceded by a line starting with "letter-probability matrix:" and containing the length of the alphabet, width of the motif, number of occurrences of the motif, and the E-value of the motif.
Note: Earlier versions of MEME gave the posterior probabilities--the probability after applying a prior on letter frequencies--rather than the observed frequencies. These versions of MEME also gave the number of possible positions for the motif rather than the actual number of occurrences. The output from these earlier versions of MEME can be distinguished by "n=" rather than "nsites=" in the line preceding the matrix.
PSSM Format
The position-specific scoring matrix corresponding to the motif is printed for use by database search programs such as MAST. This matrix is a log-odds matrix calculated by taking 100 times the log (base 2) of the ratio p/f at each position in the motif where p is the probability of a particular letter at that position in the motif, and f is the background frequency of the letter (given in the command line summary section.) This is the same matrix that is used above in computing the p-values of the occurrences of the motif in the Sites and Block Diagrams sections. The scoring matrix is printed "sideways"--columns correspond to the letters in the alphabet (in the same order as shown in the simplified motif) and rows corresponding to the positions of the motif, position one first. The scoring matrix is preceded by a line starting with "log-odds matrix:" and containing the length of the alphabet, width of the motif, number of characters in the training set, the scoring threshold (obsolete) and the motif E-value.
Note: The probability p used to compute the PSSM is not exactly the same as the corresponding value in the Position Specific Probability Matrix (PSPM). The values of p used to compute the PSSM take into account the motif prior, whereas the values in the PSPM are just the observed frequencies of letters in the motif sites.
BLOCKS Format
For use with BLOCKS tools.
FASTA Format
The FASTA format as described here.
Raw Format
Just the sites of the sequences that contributed to the motif. One site per line.
Sites

MEME displays the occurrences (sites) of the motif in the training set. The sites are shown aligned with each other, and the ten sequence positions preceding and following each site are also shown. Each site is identified by the name of the sequence where it occurs, the strand (if both strands of DNA sequences are being used), and the position in the sequence where the site begins. When the DNA strand is specified, '+' means the sequence in the training set, and '-' means the reverse complement of the training set sequence. (For '-' strands, the 'start' position is actually the position on the positive strand where the site ends.) The sites are listed in order of increasing statistical significance (p-value). The p-value of a site is computed from the the match score of the site with the position specific scoring matrix for the motif. The p-value gives the probability of a random string (generated from the background letter frequencies) having the same match score or higher. (This is referred to as the position p-value by the MAST algorithm.)

Block Diagrams

The occurrences of the motif in the training set sequences are shown as coloured blocks on a line. One diagram is printed for each sequence showing all the sites contributating to that motif in that sequence. The sequences are listed in the same order as in the input to make it easier to compare multiple block diagrams. Additionally the best p-value for the sequence/motif combination is listed though this may not be in ascending order as with the sites. The p-value of an occurrence is the probability of a single random subsequence the length of the motif, generated according to the 0-order background model, having a score at least as high as the score of the occurrence. When the DNA strand is specified '+', it means the motif appears from left to right on the sequence, and '-' means the motif appears from right to left on the complementary strand. A sequence position scale is shown at the end of each table of block diagrams.

Combined Block Diagrams

The motif occurrences shown in the motif summary may not be exactly the same as those reported in each motif section because only motifs with a position p-value of 0.0001 that don't overlap other, more significant motif occurrences are shown.

See the documentation for MAST output for the definition of position and combined p-values.