AME (Analysis of Motif Enrichment): Compiled on Apr 13 2011 at 12:12:54 ------------------------------ Copyright (c) Robert McLeay & Timothy Bailey , 2009. Command line ame --oc results/mea_results_ame/Scl.ame_out --verbose 1 --fix-partition 2400 --bgformat 0 results/mea_results_ame/Scl-shuffled_w_bg.fa data/motif_databases/all_motifs.meme Warning: Not in partition maximisation mode. Fixing partition at 2400. Threshold p-value for reporting results: 0.001 Motif p-values are corrected by #Motifs * #ThresholdsTested - (863 * 1 = 863) 1. Fisher-exact p-value of motif MA0140.1 Tal1::Gata1 top 2400 seqs: 4.199e-81 (Corrected p-value: 3.623e-78) 2. Fisher-exact p-value of motif MA0035.2 Gata1 top 2400 seqs: 4.004e-49 (Corrected p-value: 3.455e-46) 3. Fisher-exact p-value of motif Gata5_primary top 2400 seqs: 8.063e-35 (Corrected p-value: 6.959e-32) 4. Fisher-exact p-value of motif Gata6_primary top 2400 seqs: 2.234e-34 (Corrected p-value: 1.928e-31) 5. Fisher-exact p-value of motif Gata3_primary top 2400 seqs: 1.733e-31 (Corrected p-value: 1.495e-28) 6. Fisher-exact p-value of motif MA0300.1 GAT1 top 2400 seqs: 1.434e-29 (Corrected p-value: 1.238e-26) 7. Fisher-exact p-value of motif Klf7_primary top 2400 seqs: 2.094e-23 (Corrected p-value: 1.807e-20) 8. Fisher-exact p-value of motif MA0149.1 EWSR1-FLI1 top 2400 seqs: 6.444e-20 (Corrected p-value: 5.561e-17) 9. Fisher-exact p-value of motif MA0309.1 GZF3 top 2400 seqs: 7.584e-20 (Corrected p-value: 6.545e-17) 10. Fisher-exact p-value of motif Zfp410_secondary top 2400 seqs: 8.119e-19 (Corrected p-value: 7.007e-16) 11. Fisher-exact p-value of motif Elf3_primary top 2400 seqs: 1.508e-18 (Corrected p-value: 1.301e-15) 12. Fisher-exact p-value of motif MA0039.2 Klf4 top 2400 seqs: 9.182e-17 (Corrected p-value: 7.924e-14) 13. Fisher-exact p-value of motif MA0443.1 btd top 2400 seqs: 1.578e-15 (Corrected p-value: 1.362e-12) 14. Fisher-exact p-value of motif Sp4_primary top 2400 seqs: 2.699e-15 (Corrected p-value: 2.33e-12) 15. Fisher-exact p-value of motif MA0162.1 Egr1 top 2400 seqs: 3.233e-15 (Corrected p-value: 2.79e-12) 16. Fisher-exact p-value of motif MA0450.1 hkb top 2400 seqs: 8.395e-15 (Corrected p-value: 7.245e-12) 17. Fisher-exact p-value of motif Ascl2_secondary top 2400 seqs: 2.046e-14 (Corrected p-value: 1.765e-11) 18. Fisher-exact p-value of motif Zfp281_secondary top 2400 seqs: 2.568e-14 (Corrected p-value: 2.216e-11) 19. Fisher-exact p-value of motif MA0399.1 SUT1 top 2400 seqs: 3.188e-14 (Corrected p-value: 2.751e-11) 20. Fisher-exact p-value of motif MA0062.2 GABPA top 2400 seqs: 3.343e-14 (Corrected p-value: 2.885e-11) 21. Fisher-exact p-value of motif Smad3_secondary top 2400 seqs: 5.75e-14 (Corrected p-value: 4.962e-11) 22. Fisher-exact p-value of motif Gabpa_secondary top 2400 seqs: 1.076e-13 (Corrected p-value: 9.284e-11) 23. Fisher-exact p-value of motif Bcl6b_secondary top 2400 seqs: 2.306e-13 (Corrected p-value: 1.99e-10) 24. Fisher-exact p-value of motif MA0079.2 SP1 top 2400 seqs: 8.482e-13 (Corrected p-value: 7.32e-10) 25. Fisher-exact p-value of motif MA0333.1 MET31 top 2400 seqs: 3.308e-12 (Corrected p-value: 2.855e-09) 26. Fisher-exact p-value of motif MA0283.1 CHA4 top 2400 seqs: 3.975e-12 (Corrected p-value: 3.43e-09) 27. Fisher-exact p-value of motif MA0334.1 MET32 top 2400 seqs: 1.209e-11 (Corrected p-value: 1.044e-08) 28. Fisher-exact p-value of motif MA0073.1 RREB1 top 2400 seqs: 1.907e-11 (Corrected p-value: 1.646e-08) 29. Fisher-exact p-value of motif MA0080.2 SPI1 top 2400 seqs: 3.284e-11 (Corrected p-value: 2.834e-08) 30. Fisher-exact p-value of motif MA0410.1 UGA3 top 2400 seqs: 2.68e-10 (Corrected p-value: 2.313e-07) 31. Fisher-exact p-value of motif MA0374.1 RSC3 top 2400 seqs: 3.358e-10 (Corrected p-value: 2.898e-07) 32. Fisher-exact p-value of motif Zbtb7b_primary top 2400 seqs: 3.937e-10 (Corrected p-value: 3.398e-07) 33. Fisher-exact p-value of motif MA0156.1 FEV top 2400 seqs: 4.414e-10 (Corrected p-value: 3.809e-07) 34. Fisher-exact p-value of motif MA0045.1 HMG-I/Y top 2400 seqs: 5.824e-10 (Corrected p-value: 5.026e-07) 35. Fisher-exact p-value of motif MA0285.1 CRZ1 top 2400 seqs: 9.547e-10 (Corrected p-value: 8.239e-07) 36. Fisher-exact p-value of motif Zfp281_primary top 2400 seqs: 1.234e-09 (Corrected p-value: 1.065e-06) 37. Fisher-exact p-value of motif Mtf1_secondary top 2400 seqs: 1.636e-09 (Corrected p-value: 1.412e-06) 38. Fisher-exact p-value of motif MA0395.1 STP2 top 2400 seqs: 2.067e-09 (Corrected p-value: 1.784e-06) 39. Fisher-exact p-value of motif MA0449.1 h top 2400 seqs: 2.34e-09 (Corrected p-value: 2.019e-06) 40. Fisher-exact p-value of motif MA0062.1 GABPA top 2400 seqs: 2.734e-09 (Corrected p-value: 2.359e-06) 41. Fisher-exact p-value of motif Foxl1_primary top 2400 seqs: 3.242e-09 (Corrected p-value: 2.798e-06) 42. Fisher-exact p-value of motif Ehf_primary top 2400 seqs: 3.337e-09 (Corrected p-value: 2.879e-06) 43. Fisher-exact p-value of motif MA0375.1 RSC30 top 2400 seqs: 4.511e-09 (Corrected p-value: 3.893e-06) 44. Fisher-exact p-value of motif MA0157.1 FOXO3 top 2400 seqs: 9.325e-09 (Corrected p-value: 8.048e-06) 45. Fisher-exact p-value of motif MA0137.1 STAT1 top 2400 seqs: 1.173e-08 (Corrected p-value: 1.012e-05) 46. Fisher-exact p-value of motif MA0026.1 Eip74EF top 2400 seqs: 1.226e-08 (Corrected p-value: 1.058e-05) 47. Fisher-exact p-value of motif Srf_secondary top 2400 seqs: 1.243e-08 (Corrected p-value: 1.072e-05) 48. Fisher-exact p-value of motif SCGCMGC top 2400 seqs: 1.351e-08 (Corrected p-value: 1.166e-05) 49. Fisher-exact p-value of motif MA0408.1 TOS8 top 2400 seqs: 1.574e-08 (Corrected p-value: 1.358e-05) 50. Fisher-exact p-value of motif MA0136.1 ELF5 top 2400 seqs: 1.607e-08 (Corrected p-value: 1.387e-05) 51. Fisher-exact p-value of motif Gm397_secondary top 2400 seqs: 2.361e-08 (Corrected p-value: 2.038e-05) 52. Fisher-exact p-value of motif MA0042.1 FOXI1 top 2400 seqs: 2.643e-08 (Corrected p-value: 2.281e-05) 53. Fisher-exact p-value of motif Zfp740_secondary top 2400 seqs: 2.691e-08 (Corrected p-value: 2.322e-05) 54. Fisher-exact p-value of motif Zfp161_primary top 2400 seqs: 2.743e-08 (Corrected p-value: 2.368e-05) 55. Fisher-exact p-value of motif MA0361.1 RDS1 top 2400 seqs: 3.849e-08 (Corrected p-value: 3.321e-05) 56. Fisher-exact p-value of motif Nkx2-2_2823.1 top 2400 seqs: 4.941e-08 (Corrected p-value: 4.264e-05) 57. Fisher-exact p-value of motif Glis2_primary top 2400 seqs: 5.427e-08 (Corrected p-value: 4.683e-05) 58. Fisher-exact p-value of motif Nkx2-5_3436.1 top 2400 seqs: 6.252e-08 (Corrected p-value: 5.395e-05) 59. Fisher-exact p-value of motif MA0394.1 STP1 top 2400 seqs: 7.619e-08 (Corrected p-value: 6.575e-05) 60. Fisher-exact p-value of motif MA0277.1 AZF1 top 2400 seqs: 9.117e-08 (Corrected p-value: 7.868e-05) 61. Fisher-exact p-value of motif Egr1_primary top 2400 seqs: 1.154e-07 (Corrected p-value: 9.958e-05) 62. Fisher-exact p-value of motif Myf6_secondary top 2400 seqs: 1.171e-07 (Corrected p-value: 0.000101) 63. Fisher-exact p-value of motif MA0030.1 FOXF2 top 2400 seqs: 1.607e-07 (Corrected p-value: 0.0001387) 64. Fisher-exact p-value of motif MA0079.1 SP1 top 2400 seqs: 1.663e-07 (Corrected p-value: 0.0001435) 65. Fisher-exact p-value of motif MA0297.1 FKH2 top 2400 seqs: 2.372e-07 (Corrected p-value: 0.0002046) 66. Fisher-exact p-value of motif MA0029.1 Evi1 top 2400 seqs: 4.94e-07 (Corrected p-value: 0.0004262) 67. Fisher-exact p-value of motif Titf1_1722.2 top 2400 seqs: 5.464e-07 (Corrected p-value: 0.0004714) 68. Fisher-exact p-value of motif MA0332.1 MET28 top 2400 seqs: 5.513e-07 (Corrected p-value: 0.0004757) 69. Fisher-exact p-value of motif MA0458.1 slp1 top 2400 seqs: 6.626e-07 (Corrected p-value: 0.0005717) 70. Fisher-exact p-value of motif MA0096.1 bZIP910 top 2400 seqs: 7.094e-07 (Corrected p-value: 0.000612)