AME (Analysis of Motif Enrichment): Compiled on Apr 13 2011 at 12:12:54
Copyright © Robert McLeay r.mcleay@imb.uq.edu.au & Timothy Bailey t.bailey@imb.uq.edu.au, 2009.

If AME is of use to you in your research, please cite:

Robert McLeay and Timothy L. Bailey, "Motif Enrichment Analysis: A unified framework and method evaluation", BMC Bioinformatics, 11:165, 2010, doi:10.1186/1471-2105-11-165.


Command line
ame --oc results/mea_results_ame/Scl.ame_out --verbose 1 --fix-partition 2400 --bgformat 0 results/mea_results_ame/Scl-shuffled_w_bg.fa data/motif_databases/all_motifs.meme

Warning: Not in partition maximisation mode. Fixing partition at 2400.

Threshold p-value for reporting results: 0.001
Motif p-values are corrected by #Motifs × #ThresholdsTested – (863 × 1 = 863)

motif numberscoring methodmotif namesecondary motif namescored sequencesp-valuecorrected p-value
1.Fisher-exact p-value of motifMA0140.1Tal1::Gata1top 2400 seqs4.199e-813.623e-78
2.Fisher-exact p-value of motifMA0035.2Gata1top 2400 seqs4.004e-493.455e-46
3.Fisher-exact p-value of motifGata5_primarytop 2400 seqs8.063e-356.959e-32
4.Fisher-exact p-value of motifGata6_primarytop 2400 seqs2.234e-341.928e-31
5.Fisher-exact p-value of motifGata3_primarytop 2400 seqs1.733e-311.495e-28
6.Fisher-exact p-value of motifMA0300.1GAT1top 2400 seqs1.434e-291.238e-26
7.Fisher-exact p-value of motifKlf7_primarytop 2400 seqs2.094e-231.807e-20
8.Fisher-exact p-value of motifMA0149.1EWSR1-FLI1top 2400 seqs6.444e-205.561e-17
9.Fisher-exact p-value of motifMA0309.1GZF3top 2400 seqs7.584e-206.545e-17
10.Fisher-exact p-value of motifZfp410_secondarytop 2400 seqs8.119e-197.007e-16
11.Fisher-exact p-value of motifElf3_primarytop 2400 seqs1.508e-181.301e-15
12.Fisher-exact p-value of motifMA0039.2Klf4top 2400 seqs9.182e-177.924e-14
13.Fisher-exact p-value of motifMA0443.1btdtop 2400 seqs1.578e-151.362e-12
14.Fisher-exact p-value of motifSp4_primarytop 2400 seqs2.699e-152.33e-12
15.Fisher-exact p-value of motifMA0162.1Egr1top 2400 seqs3.233e-152.79e-12
16.Fisher-exact p-value of motifMA0450.1hkbtop 2400 seqs8.395e-157.245e-12
17.Fisher-exact p-value of motifAscl2_secondarytop 2400 seqs2.046e-141.765e-11
18.Fisher-exact p-value of motifZfp281_secondarytop 2400 seqs2.568e-142.216e-11
19.Fisher-exact p-value of motifMA0399.1SUT1top 2400 seqs3.188e-142.751e-11
20.Fisher-exact p-value of motifMA0062.2GABPAtop 2400 seqs3.343e-142.885e-11
21.Fisher-exact p-value of motifSmad3_secondarytop 2400 seqs5.75e-144.962e-11
22.Fisher-exact p-value of motifGabpa_secondarytop 2400 seqs1.076e-139.284e-11
23.Fisher-exact p-value of motifBcl6b_secondarytop 2400 seqs2.306e-131.99e-10
24.Fisher-exact p-value of motifMA0079.2SP1top 2400 seqs8.482e-137.32e-10
25.Fisher-exact p-value of motifMA0333.1MET31top 2400 seqs3.308e-122.855e-09
26.Fisher-exact p-value of motifMA0283.1CHA4top 2400 seqs3.975e-123.43e-09
27.Fisher-exact p-value of motifMA0334.1MET32top 2400 seqs1.209e-111.044e-08
28.Fisher-exact p-value of motifMA0073.1RREB1top 2400 seqs1.907e-111.646e-08
29.Fisher-exact p-value of motifMA0080.2SPI1top 2400 seqs3.284e-112.834e-08
30.Fisher-exact p-value of motifMA0410.1UGA3top 2400 seqs2.68e-102.313e-07
31.Fisher-exact p-value of motifMA0374.1RSC3top 2400 seqs3.358e-102.898e-07
32.Fisher-exact p-value of motifZbtb7b_primarytop 2400 seqs3.937e-103.398e-07
33.Fisher-exact p-value of motifMA0156.1FEVtop 2400 seqs4.414e-103.809e-07
34.Fisher-exact p-value of motifMA0045.1HMG-I/Ytop 2400 seqs5.824e-105.026e-07
35.Fisher-exact p-value of motifMA0285.1CRZ1top 2400 seqs9.547e-108.239e-07
36.Fisher-exact p-value of motifZfp281_primarytop 2400 seqs1.234e-091.065e-06
37.Fisher-exact p-value of motifMtf1_secondarytop 2400 seqs1.636e-091.412e-06
38.Fisher-exact p-value of motifMA0395.1STP2top 2400 seqs2.067e-091.784e-06
39.Fisher-exact p-value of motifMA0449.1htop 2400 seqs2.34e-092.019e-06
40.Fisher-exact p-value of motifMA0062.1GABPAtop 2400 seqs2.734e-092.359e-06
41.Fisher-exact p-value of motifFoxl1_primarytop 2400 seqs3.242e-092.798e-06
42.Fisher-exact p-value of motifEhf_primarytop 2400 seqs3.337e-092.879e-06
43.Fisher-exact p-value of motifMA0375.1RSC30top 2400 seqs4.511e-093.893e-06
44.Fisher-exact p-value of motifMA0157.1FOXO3top 2400 seqs9.325e-098.048e-06
45.Fisher-exact p-value of motifMA0137.1STAT1top 2400 seqs1.173e-081.012e-05
46.Fisher-exact p-value of motifMA0026.1Eip74EFtop 2400 seqs1.226e-081.058e-05
47.Fisher-exact p-value of motifSrf_secondarytop 2400 seqs1.243e-081.072e-05
48.Fisher-exact p-value of motifSCGCMGCtop 2400 seqs1.351e-081.166e-05
49.Fisher-exact p-value of motifMA0408.1TOS8top 2400 seqs1.574e-081.358e-05
50.Fisher-exact p-value of motifMA0136.1ELF5top 2400 seqs1.607e-081.387e-05
51.Fisher-exact p-value of motifGm397_secondarytop 2400 seqs2.361e-082.038e-05
52.Fisher-exact p-value of motifMA0042.1FOXI1top 2400 seqs2.643e-082.281e-05
53.Fisher-exact p-value of motifZfp740_secondarytop 2400 seqs2.691e-082.322e-05
54.Fisher-exact p-value of motifZfp161_primarytop 2400 seqs2.743e-082.368e-05
55.Fisher-exact p-value of motifMA0361.1RDS1top 2400 seqs3.849e-083.321e-05
56.Fisher-exact p-value of motifNkx2-2_2823.1top 2400 seqs4.941e-084.264e-05
57.Fisher-exact p-value of motifGlis2_primarytop 2400 seqs5.427e-084.683e-05
58.Fisher-exact p-value of motifNkx2-5_3436.1top 2400 seqs6.252e-085.395e-05
59.Fisher-exact p-value of motifMA0394.1STP1top 2400 seqs7.619e-086.575e-05
60.Fisher-exact p-value of motifMA0277.1AZF1top 2400 seqs9.117e-087.868e-05
61.Fisher-exact p-value of motifEgr1_primarytop 2400 seqs1.154e-079.958e-05
62.Fisher-exact p-value of motifMyf6_secondarytop 2400 seqs1.171e-070.000101
63.Fisher-exact p-value of motifMA0030.1FOXF2top 2400 seqs1.607e-070.0001387
64.Fisher-exact p-value of motifMA0079.1SP1top 2400 seqs1.663e-070.0001435
65.Fisher-exact p-value of motifMA0297.1FKH2top 2400 seqs2.372e-070.0002046
66.Fisher-exact p-value of motifMA0029.1Evi1top 2400 seqs4.94e-070.0004262
67.Fisher-exact p-value of motifTitf1_1722.2top 2400 seqs5.464e-070.0004714
68.Fisher-exact p-value of motifMA0332.1MET28top 2400 seqs5.513e-070.0004757
69.Fisher-exact p-value of motifMA0458.1slp1top 2400 seqs6.626e-070.0005717
70.Fisher-exact p-value of motifMA0096.1bZIP910top 2400 seqs7.094e-070.000612