# dreme.py -p CHEN/Tcfcp2l1.pos.fasta -n CHEN/Tcfcp2l1.pos.shuf1.fasta -minw 3 -maxw 7 -mink 3 -maxk 7 -e 0.05 -g 100 -a 0.01 -r 1 # ( dreme.py -p CHEN/Tcfcp2l1.pos.fasta -n CHEN/Tcfcp2l1.pos.shuf1.fasta ) # Revision: 1663 MEME version 4.5 ALPHABET= ACGT strands: + - Background letter frequencies (from A 0.25 C 0.25 G 0.25 T 0.25 # VALUES AFTER ERASING BEST WORD # WORD RC_WORD p P n N p-value E-value BEST ADCCRG CYGGHT 13902 26910 6187 26910 1.8e-1049 2.3e-1045 2.3e-1045 AGCCAG CTGGCT 5094 26910 2651 26910 8.4e-201 1.1e-196 ATCCAG CTGGAT 2915 26910 1152 26910 1.6e-187 2.1e-183 AGCCGG CCGGCT 2215 26910 853 26910 3.1e-146 4.0e-142 ATCCGG CCGGAT 1248 26910 310 26910 3.1e-137 4.1e-133 AACCGG CCGGTT 2136 26910 433 26910 7.0e-282 9.2e-278 AACCAG CTGGTT 4821 26910 1560 26910 9.3e-431 1.2e-426 MOTIF ADCCRG 2.3e-1045 letter-probability matrix: alength= 4 w= 6 nsites= 19228 E= 2.3e-1045 1.000000 0.000000 0.000000 0.000000 0.374038 0.000000 0.407375 0.218587 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.731797 0.000000 0.268203 0.000000 0.000000 0.000000 1.000000 0.000000 BEST ARCWGGW WCCWGYT 6220 26910 3169 26910 2.9e-267 3.6e-263 5.0e-515 AACAGGA TCCTGTT 988 26910 415 26910 8.1e-056 1.0e-051 AACTGGA TCCAGTT 987 26910 324 26910 3.0e-080 3.7e-076 AACTGGT ACCAGTT 703 26910 212 26910 2.1e-063 2.6e-059 AGCAGGA TCCTGCT 1154 26910 675 26910 1.4e-030 1.7e-026 AACAGGT ACCTGTT 747 26910 319 26910 3.3e-041 4.1e-037 AGCAGGT ACCTGCT 930 26910 526 26910 2.3e-027 2.8e-023 AGCTGGT ACCAGCT 643 26910 381 26910 6.2e-017 7.6e-013 AGCTGGA TCCAGCT 925 26910 528 26910 1.5e-026 1.9e-022 MOTIF ARCWGGW 3.6e-263 letter-probability matrix: alength= 4 w= 7 nsites= 7213 E= 3.6e-263 1.000000 0.000000 0.000000 0.000000 0.486344 0.000000 0.513656 0.000000 0.000000 1.000000 0.000000 0.000000 0.542077 0.000000 0.000000 0.457923 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.574518 0.000000 0.000000 0.425482 BEST CNGGAA TTCCNG 5853 26910 3717 26910 3.5e-129 4.2e-125 1.1e-299 CTGGAA TTCCAG 2567 26910 1561 26910 2.0e-060 2.5e-056 CAGGAA TTCCTG 2414 26910 1538 26910 4.9e-048 5.9e-044 CCGGAA TTCCGG 847 26910 381 26910 2.4e-042 2.9e-038 CGGGAA TTCCCG 695 26910 488 26910 6.4e-010 7.7e-006 MOTIF CNGGAA 4.2e-125 letter-probability matrix: alength= 4 w= 6 nsites= 6785 E= 4.2e-125 0.000000 1.000000 0.000000 0.000000 0.368755 0.129550 0.103758 0.397937 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 BEST CMCRCCC GGGYGKG 3022 26910 1607 26910 1.3e-106 1.6e-102 2.0e-105 CCCGCCC GGGCGGG 861 26910 374 26910 6.4e-046 7.5e-042 CCCACCC GGGTGGG 1186 26910 603 26910 1.5e-045 1.7e-041 CACACCC GGGTGTG 808 26910 481 26910 1.2e-020 1.5e-016 CACGCCC GGGCGTG 404 26910 205 26910 2.0e-016 2.3e-012 MOTIF CMCRCCC 1.6e-102 letter-probability matrix: alength= 4 w= 7 nsites= 3320 E= 1.6e-102 0.000000 1.000000 0.000000 0.000000 0.371386 0.628614 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.609940 0.000000 0.390060 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 BEST AAGGTCA TGACCTT 1105 26910 329 26910 6.3e-101 7.3e-097 1.8e-100 AAGGTCA TGACCTT 1105 26910 329 26910 6.3e-101 7.3e-097 MOTIF AAGGTCA 7.3e-097 letter-probability matrix: alength= 4 w= 7 nsites= 1132 E= 7.3e-097 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 BEST CCAGHY RDCTGG 8091 26910 6391 26910 1.1e-061 1.3e-057 7.9e-557 CCAGCC GGCTGG 2440 26910 1869 26910 6.2e-020 7.3e-016 CCAGAC GTCTGG 1550 26910 1299 26910 7.3e-007 8.6e-003 CCAGTT AACTGG 1117 26910 717 26910 9.0e-022 1.1e-017 CCAGCT AGCTGG 1569 26910 1250 26910 3.7e-010 4.3e-006 CCAGAT ATCTGG 1278 26910 886 26910 3.9e-018 4.6e-014 CCAGTC GACTGG 1799 26910 1323 26910 8.6e-019 1.0e-014 MOTIF CCAGHY 1.3e-057 letter-probability matrix: alength= 4 w= 6 nsites= 10096 E= 1.3e-057 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.285460 0.419869 0.000000 0.294671 0.000000 0.592908 0.000000 0.407092 BEST RGGCGGW WCCGCCY 1298 26910 651 26910 2.0e-051 2.3e-047 2.9e-061 GGGCGGT ACCGCCC 333 26910 158 26910 7.7e-016 8.9e-012 AGGCGGT ACCGCCT 294 26910 138 26910 1.9e-014 2.2e-010 GGGCGGA TCCGCCC 459 26910 198 26910 2.2e-025 2.6e-021 AGGCGGA TCCGCCT 286 26910 169 26910 2.0e-008 2.3e-004 MOTIF RGGCGGW 2.3e-047 letter-probability matrix: alength= 4 w= 7 nsites= 1390 E= 2.3e-047 0.420144 0.000000 0.579856 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.547482 0.000000 0.000000 0.452518 BEST ACAAWGV BCWTTGT 2495 26910 1584 26910 2.3e-050 2.6e-046 1.1e-055 ACAAAGA TCTTTGT 509 26910 366 26910 6.2e-007 7.1e-003 ACAAAGC GCTTTGT 476 26910 296 26910 3.6e-011 4.1e-007 ACAATGG CCATTGT 371 26910 200 26910 2.9e-013 3.3e-009 ACAATGA TCATTGT 303 26910 183 26910 2.5e-008 2.9e-004 ACAATGC GCATTGT 248 26910 197 26910 8.6e-003 9.9e+001 ACAAAGG CCTTTGT 733 26910 384 26910 1.4e-026 1.6e-022 MOTIF ACAAWGV 2.6e-046 letter-probability matrix: alength= 4 w= 7 nsites= 2676 E= 2.6e-046 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.652466 0.000000 0.000000 0.347534 0.000000 0.000000 1.000000 0.000000 0.307549 0.271674 0.420777 0.000000 BEST ADCCTGY RCAGGHT 2780 26910 1858 26910 5.3e-046 6.0e-042 1.1e-125 AGCCTGT ACAGGCT 696 26910 430 26910 5.4e-016 6.1e-012 ATCCTGT ACAGGAT 311 26910 151 26910 3.1e-014 3.5e-010 ATCCTGC GCAGGAT 325 26910 197 26910 1.0e-008 1.1e-004 AGCCTGC GCAGGCT 833 26910 661 26910 3.5e-006 4.0e-002 AACCTGT ACAGGTT 376 26910 235 26910 5.3e-009 6.0e-005 AACCTGC GCAGGTT 380 26910 249 26910 8.4e-008 9.5e-004 MOTIF ADCCTGY 6.0e-042 letter-probability matrix: alength= 4 w= 7 nsites= 2968 E= 6.0e-042 1.000000 0.000000 0.000000 0.000000 0.256739 0.000000 0.526954 0.216307 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.526954 0.000000 0.473046 BEST ATKYAAA TTTRMAT 973 26910 529 26910 8.3e-032 9.4e-028 3.1e-035 ATGTAAA TTTACAT 213 26910 89 26910 3.0e-013 3.4e-009 ATTTAAA TTTAAAT 170 26910 83 26910 2.2e-008 2.5e-004 ATGCAAA TTTGCAT 401 26910 190 26910 8.2e-019 9.2e-015 ATTCAAA TTTGAAT 224 26910 175 26910 7.9e-003 8.9e+001 MOTIF ATKYAAA 9.4e-028 letter-probability matrix: alength= 4 w= 7 nsites= 1007 E= 9.4e-028 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.613704 0.386296 0.000000 0.620655 0.000000 0.379345 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 BEST AGGCRG CYGCCT 3720 26910 2861 26910 6.3e-030 7.1e-026 1.8e-057 AGGCGG CCGCCT 769 26910 544 26910 1.8e-010 2.0e-006 AGGCAG CTGCCT 3061 26910 2381 26910 1.2e-022 1.4e-018 MOTIF AGGCRG 7.1e-026 letter-probability matrix: alength= 4 w= 6 nsites= 4102 E= 7.1e-026 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.806680 0.000000 0.193320 0.000000 0.000000 0.000000 1.000000 0.000000 BEST CTAGTTH DAACTAG 822 26910 434 26910 4.1e-029 4.6e-025 2.3e-033 CTAGTTT AAACTAG 361 26910 194 26910 4.8e-013 5.3e-009 CTAGTTA TAACTAG 173 26910 87 26910 4.9e-008 5.4e-004 CTAGTTC GAACTAG 345 26910 163 26910 1.7e-016 1.9e-012 MOTIF CTAGTTH 4.6e-025 letter-probability matrix: alength= 4 w= 7 nsites= 845 E= 4.6e-025 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.189349 0.391716 0.000000 0.418935 BEST CCGGTMH DKACCGG 769 26910 398 26910 1.2e-028 1.3e-024 1.3e-116 CCGGTCT AGACCGG 227 26910 109 26910 4.9e-011 5.5e-007 CCGGTAA TTACCGG 61 26910 25 26910 6.4e-005 7.1e-001 CCGGTAC GTACCGG 78 26910 37 26910 8.1e-005 9.0e-001 CCGGTCC GGACCGG 254 26910 124 26910 8.8e-012 9.8e-008 CCGGTAT ATACCGG 66 26910 24 26910 5.4e-006 5.9e-002 CCGGTCA TGACCGG 139 26910 88 26910 4.2e-004 4.7e+000 MOTIF CCGGTMH 1.3e-024 letter-probability matrix: alength= 4 w= 7 nsites= 786 E= 1.3e-024 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.245547 0.754453 0.000000 0.000000 0.237913 0.410941 0.000000 0.351145 BEST AAACAAD HTTGTTT 1132 26910 720 26910 8.5e-023 9.4e-019 1.0e-038 AAACAAT ATTGTTT 172 26910 119 26910 1.1e-003 1.2e+001 AAACAAG CTTGTTT 550 26910 344 26910 1.9e-012 2.1e-008 AAACAAA TTTGTTT 450 26910 264 26910 1.2e-012 1.3e-008 MOTIF AAACAAD 9.4e-019 letter-probability matrix: alength= 4 w= 7 nsites= 1192 E= 9.4e-019 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.386745 0.000000 0.467282 0.145973 BEST CACGTGD HCACGTG 380 26910 168 26910 2.2e-020 2.5e-016 4.4e-016 CACGTGT ACACGTG 126 26910 59 26910 4.5e-007 4.9e-003 CACGTGA TCACGTG 193 26910 73 26910 4.9e-014 5.4e-010 CACGTGG CCACGTG 217 26910 92 26910 3.7e-013 4.0e-009 MOTIF CACGTGD 2.5e-016 letter-probability matrix: alength= 4 w= 7 nsites= 390 E= 2.5e-016 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.361538 0.000000 0.397436 0.241026 BEST DATAAA TTTATH 1256 26910 864 26910 1.8e-018 2.0e-014 1.2e-044 AATAAA TTTATT 584 26910 366 26910 4.9e-013 5.4e-009 TATAAA TTTATA 303 26910 201 26910 2.9e-006 3.2e-002 GATAAA TTTATC 406 26910 319 26910 6.4e-004 7.1e+000 MOTIF DATAAA 2.0e-014 letter-probability matrix: alength= 4 w= 6 nsites= 1322 E= 2.0e-014 0.453858 0.000000 0.313918 0.232224 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 BEST AYACAG CTGTRT 2082 26910 1639 26910 2.8e-014 3.0e-010 8.2e-022 ATACAG CTGTAT 496 26910 390 26910 1.8e-004 2.0e+000 ACACAG CTGTGT 1620 26910 1277 26910 3.1e-011 3.4e-007 MOTIF AYACAG 3.0e-010 letter-probability matrix: alength= 4 w= 6 nsites= 2187 E= 3.0e-010 1.000000 0.000000 0.000000 0.000000 0.000000 0.769547 0.000000 0.230453 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 BEST AGGTYAC GTRACCT 491 26910 281 26910 1.2e-014 1.3e-010 1.9e-046 AGGTCAC GTGACCT 328 26910 185 26910 1.2e-010 1.2e-006 AGGTTAC GTAACCT 168 26910 97 26910 7.3e-006 7.9e-002 MOTIF AGGTYAC 1.3e-010 letter-probability matrix: alength= 4 w= 7 nsites= 502 E= 1.3e-010 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.659363 0.000000 0.340637 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 BEST GGGAGGR YCCTCCC 1773 26910 1365 26910 3.3e-014 3.5e-010 7.6e-021 GGGAGGG CCCTCCC 1154 26910 827 26910 3.7e-014 4.0e-010 GGGAGGA TCCTCCC 686 26910 585 26910 2.3e-003 2.4e+001 MOTIF GGGAGGR 3.5e-010 letter-probability matrix: alength= 4 w= 7 nsites= 1879 E= 3.5e-010 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.369878 0.000000 0.630122 0.000000 BEST WTTCTR YAGAAW 3398 26910 2894 26910 7.3e-012 7.9e-008 1.8e-048 TTTCTA TAGAAA 795 26910 666 26910 3.4e-004 3.7e+000 ATTCTA TAGAAT 447 26910 375 26910 6.3e-003 6.8e+001 ATTCTG CAGAAT 897 26910 777 26910 1.6e-003 1.7e+001 TTTCTG CAGAAA 1464 26910 1264 26910 4.6e-005 4.9e-001 MOTIF WTTCTR 7.9e-008 letter-probability matrix: alength= 4 w= 6 nsites= 3657 E= 7.9e-008 0.369428 0.000000 0.000000 0.630572 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.340443 0.000000 0.659557 0.000000 BEST AGGDCAG CTGHCCT 1790 26910 1413 26910 3.5e-012 3.7e-008 3.2e-030 AGGACAG CTGTCCT 557 26910 434 26910 4.5e-005 4.8e-001 AGGGCAG CTGCCCT 876 26910 681 26910 2.9e-007 3.2e-003 AGGTCAG CTGACCT 404 26910 338 26910 8.1e-003 8.7e+001 MOTIF AGGDCAG 3.7e-008 letter-probability matrix: alength= 4 w= 7 nsites= 1870 E= 3.7e-008 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.302139 0.000000 0.480214 0.217647 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 BEST CMGCCGC GCGGCKG 591 26910 388 26910 3.1e-011 3.3e-007 3.4e-015 CCGCCGC GCGGCGG 330 26910 213 26910 2.6e-007 2.7e-003 CAGCCGC GCGGCTG 293 26910 188 26910 8.7e-007 9.3e-003 MOTIF CMGCCGC 3.3e-007 letter-probability matrix: alength= 4 w= 7 nsites= 631 E= 3.3e-007 0.000000 1.000000 0.000000 0.000000 0.459588 0.540412 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 BEST ACATTYC GRAATGT 379 26910 233 26910 1.6e-009 1.7e-005 2.6e-016 ACATTTC GAAATGT 162 26910 110 26910 9.4e-004 1.0e+001 ACATTCC GGAATGT 217 26910 127 26910 6.5e-007 7.0e-003 MOTIF ACATTYC 1.7e-005 letter-probability matrix: alength= 4 w= 7 nsites= 382 E= 1.7e-005 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.575916 0.000000 0.424084 0.000000 1.000000 0.000000 0.000000 BEST AGAMCAG CTGKTCT 842 26910 623 26910 3.6e-009 3.9e-005 1.8e-049 AGACCAG CTGGTCT 392 26910 284 26910 1.7e-005 1.8e-001 AGAACAG CTGTTCT 459 26910 343 26910 2.1e-005 2.2e-001 MOTIF AGAMCAG 3.9e-005 letter-probability matrix: alength= 4 w= 7 nsites= 857 E= 3.9e-005 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.540257 0.459743 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 BEST CCGGM KCCGG 2235 26910 1907 26910 6.1e-008 6.5e-004 3.8e-230 CCGGA TCCGG 1074 26910 870 26910 1.3e-006 1.4e-002 CCGGC GCCGG 1554 26910 1402 26910 2.1e-003 2.3e+001 MOTIF CCGGM 6.5e-004 letter-probability matrix: alength= 4 w= 5 nsites= 2582 E= 6.5e-004 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.378776 0.621224 0.000000 0.000000 BEST AAAGCAG CTGCTTT 484 26910 335 26910 8.7e-008 9.3e-004 9.2e-014 AAAGCAG CTGCTTT 484 26910 335 26910 8.7e-008 9.3e-004 MOTIF AAAGCAG 9.3e-004 letter-probability matrix: alength= 4 w= 7 nsites= 492 E= 9.3e-004 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 BEST ATTAGCA TGCTAAT 210 26910 119 26910 2.8e-007 2.9e-003 7.6e-004 ATTAGCA TGCTAAT 210 26910 119 26910 2.8e-007 2.9e-003 MOTIF ATTAGCA 2.9e-003 letter-probability matrix: alength= 4 w= 7 nsites= 210 E= 2.9e-003 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 BEST ATAAWTA TAWTTAT 73 26910 24 26910 3.1e-007 3.3e-003 1.4e-006 ATAATTA TAATTAT 50 26910 19 26910 1.2e-004 1.3e+000 ATAAATA TATTTAT 23 26910 5 26910 4.5e-004 4.8e+000 MOTIF ATAAWTA 3.3e-003 letter-probability matrix: alength= 4 w= 7 nsites= 73 E= 3.3e-003 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.315068 0.000000 0.000000 0.684932 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 BEST KCTGGGA TCCCAGM 619 26910 461 26910 6.7e-007 7.1e-003 3.5e-020 TCTGGGA TCCCAGA 305 26910 243 26910 4.4e-003 4.6e+001 GCTGGGA TCCCAGC 318 26910 220 26910 1.3e-005 1.3e-001 MOTIF KCTGGGA 7.1e-003 letter-probability matrix: alength= 4 w= 7 nsites= 631 E= 7.1e-003 0.000000 0.000000 0.511886 0.488114 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 BEST GASGTCA TGACSTC 322 26910 210 26910 6.1e-007 6.4e-003 7.1e-012 GAGGTCA TGACCTC 224 26910 162 26910 9.0e-004 9.5e+000 GACGTCA TGACGTC 98 26910 48 26910 2.1e-005 2.2e-001 MOTIF GASGTCA 6.4e-003 letter-probability matrix: alength= 4 w= 7 nsites= 323 E= 6.4e-003 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.303406 0.696594 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 BEST AGGAMA TKTCCT 1893 26910 1618 26910 8.5e-007 9.1e-003 6.8e-041 AGGACA TGTCCT 883 26910 775 26910 3.8e-003 4.0e+001 AGGAAA TTTCCT 1044 26910 874 26910 4.2e-005 4.5e-001 MOTIF AGGAMA 9.1e-003 letter-probability matrix: alength= 4 w= 6 nsites= 1971 E= 9.1e-003 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.540335 0.459665 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 BEST ATCCTG CAGGAT 654 26910 493 26910 8.6e-007 9.1e-003 1.0e-058 ATCCTG CAGGAT 654 26910 493 26910 8.6e-007 9.1e-003 MOTIF ATCCTG 9.1e-003 letter-probability matrix: alength= 4 w= 6 nsites= 659 E= 9.1e-003 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 # 32 motifs with E-value < 0.05 found. #elapsed time: 2737.04 seconds